Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24b15
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 0.67
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 1.2
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 1.2
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 26 2.0
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 4.7
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 4.7
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 24 6.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 24 6.2
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 24 6.2
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 24 8.2
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 27.5 bits (58), Expect = 0.67
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 151 EAPWLRCLSSLCKLNQLASKRSFC*CSYL 65
+AP L LS++C + + KR FC +YL
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFCKENYL 995
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 191 NVTNLTSESHLGLTDDLHTSRKLFQSEEGI 280
++TNLT L D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.6 bits (56), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 342 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVSPRCDSDVRFVTFQRLCSKFL 166
+++ T +KL D H L IP S F+E + V CD D + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 10 LLSGCGNQENFNLFL-RIKVNKNINKMSAWRQAGLT 114
LL+G Q+ N + +I + K I+ + WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 4.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 142 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 249
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 4.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 288 WLTIPSSLWNSFLEVCR 238
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 24.2 bits (50), Expect = 6.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 285 LTIPSSLWNSFLEVCRSSVSPRCDSDVRFVTFQRLCSKF 169
++IPS L +EV S +PR +S + + + + F
Sbjct: 443 MSIPSQLKQESVEVSNLSSTPRSNSTITYPDMDPMVASF 481
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 198 RISRQSHTLG*RTTCTPPESCSKVKK 275
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 6.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 357 FFLNSVIYCTILHKLIVDDF 298
F+LN V C I+H+++ + F
Sbjct: 392 FWLNQVELCKIIHRMLTEVF 411
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 23.8 bits (49), Expect = 8.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 210 QSHTLG*RTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 323
QSH L + TP + ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,308
Number of Sequences: 5004
Number of extensions: 25219
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -