Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b15
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   1e-09
01_07_0150 + 41508546-41508636,41509384-41510343,41511082-415115...    29   0.83 
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   5.9  
03_06_0451 + 34025048-34027099,34028210-34028242                       26   7.7  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = +1

Query: 94  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 237
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>01_07_0150 +
           41508546-41508636,41509384-41510343,41511082-41511555,
           41511642-41511736
          Length = 539

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 315 LIVDDFHACWLTIPSSLWNSFLEVCRSSVSPRCDS 211
           ++VDD+  C+ T+ + L +S  E C  S    CD+
Sbjct: 157 IVVDDWTKCYGTVQTFLHSSDAESCSDSFKGECDA 191


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 351 LNSVIYCTILHKLIVDDFHACWLTIPSSLWN 259
           L+ ++  T L +L++DD   C L +PS   N
Sbjct: 452 LDLLLLATDLRQLVIDDVDCCDLDVPSEFDN 482


>03_06_0451 + 34025048-34027099,34028210-34028242
          Length = 694

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = +1

Query: 7   TLLSGCGNQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEA 186
           TLLS C  Q+NF++  RI   K + ++     A  +Y+  SNI A   R     E R +A
Sbjct: 514 TLLSACKTQKNFDMAERIA--KRVIELDPHDSA--SYVLLSNIRATSRRWGDVSEVR-KA 568

Query: 187 LKRDESHVRVTP 222
           ++  +++VR  P
Sbjct: 569 MR--DNNVRKEP 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,129
Number of Sequences: 37544
Number of extensions: 154553
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)