Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b13
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   2.5  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   5.8  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    24   7.7  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 336 VSSTTDRGQFISIMCLIYPYNNEHSFRVRNLRSSFSGKNLGSWGIQTKLGKVLKR 172
           + S + R QFI    L +   +EH F  R  R   S KNL  W +  ++  V  +
Sbjct: 13  LESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNL-DWSVSVQMPLVTSK 66


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 370 INVTLLIKSNVCFLNNR*RSVH*HNVSNLPI*QRTFLSGSKFEIQFQW 227
           I V  LI S  CF  +       H+  +LP+  RT L  +   +  QW
Sbjct: 537 IEVLSLIHSRPCFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLLDQW 584


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 196 SLDTPTTKIFTTETGSQISNP 258
           S D+ T  ++TT TG  I NP
Sbjct: 3   SKDSNTVPVYTTNTGCPIFNP 23


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 333 SSTTDRGQFISIMCLIYPYNNEHSFRVRNLRSSFSGKNLG 214
           +S T  G+  SI CL+Y + N    +V  L+  ++ +NLG
Sbjct: 46  ASKTKHGRPWSISCLVYGFPN----KVSALKFEWNWQNLG 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,712
Number of Sequences: 5004
Number of extensions: 27312
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)