Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b13
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0461 - 34107506-34107845,34107993-34108151,34108564-341087...    30   0.60 
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637     29   1.0  
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784...    27   4.2  
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889...    27   4.2  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           27   4.2  
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24...    27   7.3  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    27   7.3  

>03_06_0461 -
           34107506-34107845,34107993-34108151,34108564-34108763,
           34109042-34109213,34111127-34111350,34111438-34111644
          Length = 433

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = -1

Query: 348 KVMFVSSTTDRGQFISIMCLIY 283
           ++MFV  + +RGQ++S++CL++
Sbjct: 158 RMMFVGDSLNRGQYVSLVCLLH 179


>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
          Length = 454

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 348 KVMFVSSTTDRGQFISIMCLI 286
           +VMFV  +  RGQF S++CL+
Sbjct: 170 RVMFVGDSLGRGQFTSLVCLL 190


>08_02_0575 -
           18876988-18877029,18877072-18877102,18878290-18878418,
           18878512-18879154,18882042-18883990,18884964-18885040
          Length = 956

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 187 ESIKEI-NLQKNQTCCPDLIMYGSIRHPLKYITALLMVV 74
           +SI+E+ NLQ  Q  CP +     I+H +K + +++ ++
Sbjct: 424 QSIEELTNLQDLQLACPQIATSDHIKHNMKLLGSIIGIL 462


>04_04_1614 +
           34786296-34786315,34787432-34788347,34788426-34788950,
           34789065-34789442,34790435-34790740
          Length = 714

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 197 VWIPQL-PRFLPLKLDLKFRTRKECSLLYG*IRHIMLMN*PLSVVEET 337
           +WI  + P F     D +     ECS+    I+H +L+   LS+V+E+
Sbjct: 181 LWINAVRPAFTDRDSDTQLNPNSECSVFIEGIQHPLLLEQSLSMVKES 228


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 345 VMFVSSTTDRGQFISIMCLIYPYNNEHSFRVRNLRSSFSG 226
           VM + S    G  +S++C I P  +E SFR   + SSF+G
Sbjct: 126 VMNMVSVEPVGHGVSLVC-IQPNTSESSFRCNVVFSSFTG 164


>12_01_0028 +
           242016-242467,242547-242918,243027-243182,245007-245089,
           245159-245222,245704-246001,246616-246726,247059-247100
          Length = 525

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 348 KVMFVSSTTDRGQFISIMCLIYP 280
           ++MFV  + +R Q+ S++CL+ P
Sbjct: 165 RMMFVGDSLNRNQWESLVCLVQP 187


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 348 KVMFVSSTTDRGQFISIMCLIYP 280
           ++MFV  + +R Q+ S++CL+ P
Sbjct: 186 RMMFVGDSLNRNQWESLVCLVQP 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,483,495
Number of Sequences: 37544
Number of extensions: 141935
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)