Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24b13
(402 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.18
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 25 0.43
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 1.7
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 1.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.8 bits (54), Expect = 0.18
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 388 YKVYFQINVTLLIKSNVCFLNNR*RSVH*HNVS 290
Y ++ I VTL I VC LN RS HN+S
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFRSPSTHNMS 347
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 24.6 bits (51), Expect = 0.43
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 288 IYPYNNEHSFRVRNLRSSFSGKNLG 214
++P +H ++ S F GKN+G
Sbjct: 133 VFPSKMDHQLPLKQRSSEFCGKNIG 157
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 318 RGQFISIMCLIYPYNNEHSFRVRNL 244
+G F+S + P N+E + VR L
Sbjct: 87 QGMFLSRNAIFTPLNSEQKYEVRML 111
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 318 RGQFISIMCLIYPYNNEHSFRVRNL 244
+G F+S + P N+E + VR L
Sbjct: 87 QGMFLSRNAIFTPLNSEQKYEVRML 111
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 58 VKDLRITPNKLWKPDILMYNS 78
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 126 VKDLRITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 181 IKEINLQKNQTCCPDLIMYGS 119
+K++ + N+ PD++MY S
Sbjct: 126 VKDLRITPNKLWKPDILMYNS 146
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,841
Number of Sequences: 438
Number of extensions: 2207
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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