Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24b04
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 30 0.17
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 28 0.91
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 3.7
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 3.7
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 4.8
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 4.8
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.4
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 8.4
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 8.4
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 8.4
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 30.3 bits (65), Expect = 0.17
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 100 YVNYEKAVRVHVDVKYKTTYEQACINISKE---NRVKHGDPLYLSPQTILLDKIGVIQLF 270
+V+ + ++ ++ + TY +A + I+K N+V+H LYL Q IL D + +
Sbjct: 205 WVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQLILYDTLTFVVHL 264
Query: 271 MRSK 282
+ K
Sbjct: 265 LSQK 268
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.9 bits (59), Expect = 0.91
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 64 KFVAKDIARSLKYVNYEKAVRVHVDVKYKTTYEQAC-INISKENRVKHGDPLYLSPQTIL 240
+F+ D+ + + ++ A + + K TY+ +N R+ H D L PQ +L
Sbjct: 85 EFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRD---LKPQNLL 141
Query: 241 LDKIGVIQL 267
+DK G ++L
Sbjct: 142 IDKEGNLKL 150
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 3.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 49 DEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKT---TYEQACINISKENRVKHGDPLY 219
+EQ V+FV++ + L Y+ + K + +H D+K ++ C IS KH D +Y
Sbjct: 928 EEQLVRFVSRQVLYGLSYL-HSKGI-IHRDLKADNLLIDFDGVC-KISDFGISKHSDNVY 984
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 60 GQVCGQGHCPQFKICKL*KGSTC 128
G+ C C K CKL KGS C
Sbjct: 332 GEDCENNPCCDGKTCKLTKGSLC 354
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 208 DPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 324
D L ++ L+DK+G ++ N A+L NW H
Sbjct: 680 DLLIVNKSQPLVDKLGKPEILFMGPDENTADLVNWATIH 718
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 440 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 303
Y VV + +W ++ +A ++W+RL+ + V +G S Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 130 EHVLPFHNLHILNC 89
EHVLP L +LNC
Sbjct: 404 EHVLPIRQLFLLNC 417
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 323 CS*NQFCSSAALCILERMNSCITPILSSNIVWG 225
C N FC ++ + C PI+ +N+V G
Sbjct: 952 CLSNNFCMEHLPLLITILEKCDNPIIRNNLVIG 984
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 392 IPLPSRAISMRPRRCCTPK 448
+PLPSR+ SM PR K
Sbjct: 354 VPLPSRSHSMNPRELVAAK 372
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 282 DAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 410
D AAKLVLR R+A + V+ P +G R +G
Sbjct: 248 DLSLATAAKLVLRRRIAGTLKDEVDLQKALPKEGSQYLREVKG 290
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 278 PRCTTRRSCKIGFTNTC 328
P C T + CK G TN C
Sbjct: 100 PECKTCKFCKSGKTNLC 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,651
Number of Sequences: 5004
Number of extensions: 41549
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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