Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24b04
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0183 - 21406474-21406636,21407412-21407956 31 0.39
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 30 0.91
10_06_0161 + 11344712-11344877,11345870-11346084 28 3.7
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 28 4.8
05_01_0051 - 345125-345693,345833-346925 28 4.8
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 27 6.4
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 27 6.4
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 27 6.4
09_06_0014 + 20232853-20233135,20233190-20233194 27 8.5
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 8.5
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 8.5
01_05_0129 + 18431820-18432224 27 8.5
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834... 27 8.5
>09_06_0183 - 21406474-21406636,21407412-21407956
Length = 235
Score = 31.5 bits (68), Expect = 0.39
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 243 RQNRRYTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPS 377
R+N R + A Q +RG + R+ +HRVG E P RPS
Sbjct: 60 RENERSSGKKAAQRERRGAYRRP--RSTTVGIHRVGAEATPPRPS 102
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 30.3 bits (65), Expect = 0.91
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 261 TAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 410
TA L++ RGGA + R A +H G +P R +DG R R G
Sbjct: 89 TADRELEELARGGARERAERWAAAHLHGGGGDPRDRALADGNPDGRGRAG 138
>10_06_0161 + 11344712-11344877,11345870-11346084
Length = 126
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -3
Query: 373 GRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA*TAV 260
GR GAGS RC G +R+ ++AA A W+A TAV
Sbjct: 6 GRAGAGSGDWRCAG--WLRRADWAASR--AGWAALTAV 39
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 107 IMKRQYVFMSMSNTKRRMSKHVLISAKKIALNTAIRCICHPK----QYYSTK*ALYSCSC 274
+ +R+YV +S+T S H+L+ A+ I + + C+ + + +S Y C
Sbjct: 156 VKQRKYVICVLSSTIGSKSSHLLLLAQSIRICNLVGCVPYGRGRRCNTFSLSKNAYCNHC 215
Query: 275 APRCTTRRSCK 307
RRS K
Sbjct: 216 LDEIMRRRSRK 226
>05_01_0051 - 345125-345693,345833-346925
Length = 553
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 412 HFYAATTLLYAERNLF 459
HFYAA TLL RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 172 INISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEH 324
+ I++E+ VK DP P TI KIG +QL R H L+N Y++
Sbjct: 61 VKIAREDVVKEEDPTNNVPDTI-YSKIG-LQLHRRDN-HPLGILKNTIYDY 108
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 LGDEQPVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN 177
L + P +F + IAR L Y++ E ++R VH D+K A +N
Sbjct: 757 LNIDWPARFGICLGIARGLAYLHEESSIRVVHRDIKASNVLLDAYLN 803
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +3
Query: 258 YTAVHALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV*FRSRRG 410
Y V +D G LV + R H VG PAP SD K R R G
Sbjct: 380 YHVVSGQKDLHVTGIRDLVRQKRT--FHEVGEHPAPIDKSDTKSWIRKRHG 428
>09_06_0014 + 20232853-20233135,20233190-20233194
Length = 95
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 321 TRVAPVHRVGVEPAPRRP 374
T++AP RVGV PAP +P
Sbjct: 36 TQLAPCARVGVAPAPGQP 53
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 LGDEQPVKF-VAKDIARSLKYVNYEKAVRV-HVDVKYKTTYEQACIN 177
L + P +F + IAR L Y++ E ++RV H D+K A +N
Sbjct: 713 LNIDWPARFEICLGIARGLAYLHEESSIRVIHRDIKASNVLLDANLN 759
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 LGDEQPVKF-VAKDIARSLKYVNYEKAVR-VHVDVKYKTTYEQACIN 177
L + P +F + IAR L Y++ E ++R VH D+K A +N
Sbjct: 686 LNIDWPARFDICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLN 732
>01_05_0129 + 18431820-18432224
Length = 134
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 338 APRRR*ACSKTPKRR*SLIPLPSRAISMRPRRCCTPKGICSRSA 469
A RRR S +P PLPS ++ R PK C RSA
Sbjct: 2 AARRRQRPSSSPPLPPEHSPLPSVIVATARARTADPKIACDRSA 45
>01_01_1055 +
8342761-8342822,8343374-8343791,8343867-8344096,
8344136-8344324,8344458-8344555,8344588-8344742
Length = 383
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 421 HRNGPRRERN*TLPSLGRLGAGSTPTRCTGATRV 320
H + R + T+P L +G+ ST RCT RV
Sbjct: 12 HNDERRNGTSKTVPELSTVGSKSTVGRCTALQRV 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,503
Number of Sequences: 37544
Number of extensions: 303130
Number of successful extensions: 889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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