Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b04
         (501 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023782-1|AAZ41791.1|  779|Drosophila melanogaster LD11946p pro...    33   0.16 
BT003565-1|AAO39569.1|  816|Drosophila melanogaster LP02021p pro...    28   6.2  

>BT023782-1|AAZ41791.1|  779|Drosophila melanogaster LD11946p
           protein.
          Length = 779

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = -3

Query: 427 WPHRNGPRRERN*TLPSLGRLGAGSTPTRCTGATRVRKTNFAAPPRCASWSA 272
           WPHR   R        S  R    S+ TRC  ATR  +T  +APPR   W A
Sbjct: 3   WPHRTSSRAAPA-RRRSPSRTLLSSSSTRCCSATR--RTMASAPPRIRRWIA 51


>BT003565-1|AAO39569.1|  816|Drosophila melanogaster LP02021p
           protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 254 ALYSCSC--APR----CTTRRSCKIGFTNTCCPSAPR 346
           A  SC C   PR    C+TRRS K   ++TC PS+ R
Sbjct: 15  AARSCPCHRPPRPPSCCSTRRSSKSSRSHTCPPSSSR 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,880,777
Number of Sequences: 53049
Number of extensions: 500147
Number of successful extensions: 1273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)