Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24b04
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.3  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   3.3  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   3.3  
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z67755-2|CAA91755.2|  322|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   4.4  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   4.4  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z69661-1|CAA93493.1|  253|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF038618-10|AAB92065.2|  474|Caenorhabditis elegans P38 map kina...    27   7.6  

>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 YKTTYEQACINISKENRVKHGDPLYLSP 228
           Y+TT   ACIN  KE  V+ G  +Y +P
Sbjct: 16  YQTTANDACINRLKELNVESGAKIYTTP 43


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 175 NISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEHVLP 333
           +I K      G PLYL  ++I   KI  I    R   H A  LQN   E + P
Sbjct: 41  SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGMPP 93


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 263 SCSCAPRCTTRRSCKIGFTNTCCPSAP 343
           SC CAP C    SC +      CP+ P
Sbjct: 45  SCGCAPACPQAPSCPVCPPPQPCPAPP 71


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 332  GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 159
            GN     + C+++   +      CI   LSSN+     D Y+G  C T  S L LI    
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866

Query: 158  YVVLYL 141
              +L+L
Sbjct: 1867 LALLFL 1872


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 332  GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 159
            GN     + C+++   +      CI   LSSN+     D Y+G  C T  S L LI    
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866

Query: 158  YVVLYL 141
              +L+L
Sbjct: 1867 LALLFL 1872


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = -1

Query: 174 NTCLLIRRFVFDID 133
           ++CLL+R+F+FDID
Sbjct: 353 SSCLLLRKFIFDID 366


>Z67755-2|CAA91755.2|  322|Caenorhabditis elegans Hypothetical
           protein F54F7.2 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 46  GDEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKTTY 159
           GD  PV  V+ DI   ++      +VRV ++V+Y T Y
Sbjct: 164 GDSVPVN-VSSDIGLVIEAAFMNPSVRVEIEVEYSTPY 200


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 263 CITPILSSNIVWGDKYSGSPCLTRFS 186
           C+ PIL   + W +KY  S CL+  S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 263 CITPILSSNIVWGDKYSGSPCLTRFS 186
           C+ PIL   + W +KY  S CL+  S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 272 CAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 370
           C+P C +    K GF   CC S   R   C+KT
Sbjct: 120 CSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150


>Z69661-1|CAA93493.1|  253|Caenorhabditis elegans Hypothetical
           protein F48F7.3 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 109 YEKAVRVHVDVKYKTTYEQACINISKENRVKHGDPLYLS-PQTILLDKIGVIQLFMR 276
           YE  ++V ++  Y     +A   I++ N+ +HG  L L     + +D IG+  L  R
Sbjct: 37  YEDIIQVDINENYHNITYKAIFWINEINKCRHGPKLLLKIDDDVHIDMIGLQFLIKR 93


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 253 GVIQLFMRSKMHNAAELQNWFYEHV 327
           GVI L +  + H  ++LQ WFYE V
Sbjct: 139 GVI-LVVNPEEHKGSDLQQWFYEFV 162


>AF038618-10|AAB92065.2|  474|Caenorhabditis elegans P38 map kinase
           family protein 3 protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 34  RYVLGDEQPVKFVAKDIARSLKYVNYEKAVRVHVDVK 144
           R VL DE  +KF+   I R+LKY++   A  +H D+K
Sbjct: 221 RRVLTDEH-IKFIIYQIIRALKYIH--SANIIHRDLK 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,565
Number of Sequences: 27780
Number of extensions: 253310
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)