Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a24
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469...    30   1.1  
02_05_0891 - 32554355-32555305                                         30   1.5  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   2.7  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    29   3.5  
07_01_0245 - 1803170-1803887,1803971-1804641                           28   4.6  
01_06_1510 - 37859664-37861319                                         28   6.1  

>08_02_1369 -
           26445725-26445812,26446443-26446529,26446720-26446928,
           26447501-26447583,26447672-26447720,26447800-26447959,
           26448795-26448891,26449424-26449535,26449637-26449702,
           26450135-26450206,26450413-26450487,26451139-26451266,
           26451551-26451772,26452084-26452355,26452447-26452543,
           26452633-26452738,26454834-26455220
          Length = 769

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +3

Query: 162 AKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLIT 341
           ++D++ S K +   R +     GK   T E+  Q+  H  +         +LH   VL+T
Sbjct: 677 SRDVSRS-KDMRFFRPLHCLSHGKQMPTAEYTSQLPGHVDEGDQGVNAMQWLHKEPVLVT 735

Query: 342 KS--GVIQLIMKSKLPYAIELQEWLLEEVI 425
            S  G   +I+K  +P  I +   L +E+I
Sbjct: 736 VSGDGRFYIIVKVGVPTLIGVSHILSQEMI 765


>02_05_0891 - 32554355-32555305
          Length = 316

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 260 PNPAPCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQI 379
           PNPAP     G    P V +P   A ++IW  ST++EV+I
Sbjct: 112 PNPAPKQGAEGNG--PKVSSPKRQAFHRIW--STEDEVRI 147


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 353 HARFGNEHCVWVQIQRVALLCHA 285
           H  FG++H + VQ+Q  A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225


>09_04_0247 +
           16030543-16031324,16032812-16033088,16033374-16033559,
           16033714-16033866,16034277-16034702,16035922-16037668,
           16037687-16038183,16038519-16038709,16038786-16038941,
           16040077-16040311,16040416-16040723,16041279-16041439,
           16041852-16041895,16041975-16042067
          Length = 1751

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 574 LANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 446
           L   +SD LAS  S+LA V     +++ A+ S  S S++ +Y+
Sbjct: 45  LRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 324 VGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 205
           VG  +   P  PR    GAG G H  TS C C+ R + LP
Sbjct: 11  VGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 317 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 409
           AP H  H+Q++R S      +ALRHR  R A
Sbjct: 24  APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,304
Number of Sequences: 37544
Number of extensions: 397070
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)