Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24a24
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.0
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 1.0
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.0
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.0
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 1.0
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.0
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 27 9.5
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 27 9.5
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4856
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4216
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4856
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4856
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4216
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFAN 575
A + N +I KIDD T +L + +ADL +A + N
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVIN 4856
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 337 MSTVCGCKYSGSPCFATLSGAWCWIWSACSNVDLY--LPSTWTRIARSQFTY 188
+S +CG + S P +G C I ACS+V+ + +T IAR F++
Sbjct: 18 ISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSH 69
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 471 DTNDVIAKIDDLTQKLTVANADLAE 545
+ N +IAK+ L ++LT NA+L E
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEE 1133
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 153 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAP 281
R +D +SLK V+ + + V +DG+YK ++++ P
Sbjct: 93 RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIP 135
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 471 DTNDVIAKIDDLTQKLTVANADLAE 545
+ N +IAK+ L ++LT NA+L E
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEE 1133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,104,281
Number of Sequences: 27780
Number of extensions: 315888
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -