Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a22
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   0.99 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   1.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.2  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   9.2  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 464  RITHFCINIYLYITYFYFAQQYQSCSVVTS*TFLLLTIVKK*KRQIETSKVTYDRTICYI 285
            ++TH  +N+     Y  F +  Q CS+     F+L+T  ++ K  +  SK+  D   C  
Sbjct: 1391 KVTHIILNLPDIEAYVLFVKSLQLCSLYKDTKFILVTSTRQ-KESL--SKIFSDSEDCNS 1447

Query: 284  NSLITLFQKLK 252
             S+  + + +K
Sbjct: 1448 ESIHYVLKLVK 1458


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 198 TYIRNCKQCCFFNKTLYCFQLLKQSNKTIYITDCTIIRH 314
           +Y R C +C    K +      K+ N+TI+  DC  +RH
Sbjct: 96  SYHRECFRCHDCRKQIIDSNF-KRDNRTIFCNDCKQVRH 133


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 220 CLQFRIYVHTYFY*SMKSYFIIINIFKQYFPLIL*SFLN 104
           C++F +    Y++  + SY +++++    F +I   FLN
Sbjct: 172 CMKFGLSTTLYYFYPVISYLVVVSLAYVSFSIIYALFLN 210


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 384 DATALILLCKIEVCYI*INIYTKMRNSLRRKIKAII 491
           D+   ILL KI+VC   I +YT++   +R K+   +
Sbjct: 317 DSIDPILLEKIDVCEENIILYTELLRPMRYKLPRFV 352


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 192 VCTYIRNCKQCCFFNKTLYCFQLLKQ 269
           +CT IRNC+      +  YC  L+K+
Sbjct: 214 ICTAIRNCEFMSDEEQIKYCKDLIKK 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,129
Number of Sequences: 5004
Number of extensions: 44280
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)