Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a22
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione S-tran...    25   2.7  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    23   6.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.2  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.2  

>AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione
           S-transferase u1 protein.
          Length = 233

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 294 DCTIIRHFACFNLSFLF 344
           D  ++ H  CFNL+FL+
Sbjct: 89  DRALVNHRLCFNLAFLY 105


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 499 LSVIIAFILRLNELRIFV*IFIYI 428
           LSV++A ILRL  + +   +F+Y+
Sbjct: 857 LSVVMAPILRLIPMSVLFGVFLYL 880


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 499 VS*ITFKPHVSKYITLCIFKKVL 567
           V+ I F P V  +ITLCI    L
Sbjct: 801 VAFIVFDPFVELFITLCIVVNTL 823


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 265 NRVIRLFI*QIVRSYVTLL-VSICL 336
           NRV RL   ++VR+Y T+  V++C+
Sbjct: 783 NRVHRLLAMRVVRAYKTISHVAVCV 807


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,132
Number of Sequences: 2352
Number of extensions: 9818
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)