Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a22
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 176 NEELFHYYKYF*TIFSVDFIIIPKCT*ILKALIEFPRTRQ 57
           ++  F  + YF  + S   I  P CT +L  LI  PRT++
Sbjct: 512 HKTFFSSFNYF-QVLSESLIAYPNCTTVLMQLIYNPRTKE 550


>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = -3

Query: 203 ICTYILLLINE-ELFHYYKYF 144
           IC+YI++L++  EL+ YYKY+
Sbjct: 183 ICSYIIVLLSVFELYVYYKYW 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,350
Number of Sequences: 27780
Number of extensions: 241784
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)