Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a19
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           36   0.001
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       29   0.13 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         25   2.1  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         25   2.1  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 30/121 (24%), Positives = 48/121 (39%)
 Frame = +3

Query: 285 DLTRHQKAVNVVRWSPNGQLLASGDDESIIFIWKQKLEELSPATEGEEQYKETWVVYKTL 464
           +L  H+  V +V+W+   Q LAS D   IIF+W               +Y+  W V + +
Sbjct: 59  NLRGHRSDVILVKWNEPYQKLASCDSSGIIFVW--------------IKYEGRWSV-ELI 103

Query: 465 RGHMEDVLDISWSMDGLQLASGSVDNKLIVWDIHRARYTTILSDHKGFVQGVCWDPKGQY 644
                 V   SWS DG        D  ++V  +   RY + + +    +    W P  Q 
Sbjct: 104 NDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQRYWSSMLNLDATITCGIWTPDDQQ 163

Query: 645 I 647
           +
Sbjct: 164 V 164


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 495 ICQGHLPCALEESYKQPKFLYIAPHPQLPE 406
           +C+  + C + E YK P F Y++  P   E
Sbjct: 357 VCRRTISCGIAEEYKVPYFDYVSSDPSFEE 386


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 522 PTVSRPYSR--ICQGHLPCALEESYKQPKFLYIAPHPQLPEKVLP 394
           P V  PY +  +   H P  L  +Y      Y  P P  P+ ++P
Sbjct: 168 PAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVP 212


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 522 PTVSRPYSR--ICQGHLPCALEESYKQPKFLYIAPHPQLPEKVLP 394
           P V  PY +  +   H P  L  +Y      Y  P P  P+ ++P
Sbjct: 168 PAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQPSPSHPQPIVP 212


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,755
Number of Sequences: 2352
Number of extensions: 14840
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)