Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a18
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.0  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.0  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 628 RVLGSPHSGLQGVEPSSILLHHDGLGKAHR 539
           RV G+ ++ +     +S+  H +GLG+ HR
Sbjct: 28  RVRGNGNAIVSNSASNSVHGHREGLGRRHR 57


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 628 RVLGSPHSGLQGVEPSSILLHHDGLGKAHR 539
           RV G+ ++ +     +S+  H +GLG+ HR
Sbjct: 29  RVRGNGNAIVSNSASNSVHGHREGLGRRHR 58


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 610 HSGLQGVEPSSILLHHDGLGKAHRALSG 527
           H  +QG E +S  L+ +  G   RAL G
Sbjct: 34  HQEMQGKEKNSASLNSENFGIFKRALMG 61


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 316 PTQGVP--YPATQGAPYPTTQGAPYPTTQGAPYPTTQGLP 429
           P+ G P   P+   +P    +G+P   +QG P     G P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 453 WHTLSNWVW*TLSCRVWRTLSCRVW 379
           W     W++  L C +W  L+  VW
Sbjct: 125 WEVFKVWIFGDLWCSIW--LAVDVW 147


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 463 QPGMAHSEQLGMVDPE 416
           QPGM+  E LG+  P+
Sbjct: 467 QPGMSFGEPLGLRRPQ 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,640
Number of Sequences: 438
Number of extensions: 4787
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)