Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a16
         (143 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    27   2.1  

>04_04_1154 -
          31297628-31298020,31298150-31298300,31298389-31298620,
          31298700-31298910,31299137-31299255,31299341-31299415,
          31299991-31300189,31300258-31300664,31300775-31300839,
          31300967-31301011,31301449-31301520,31301597-31301671,
          31301912-31301983,31302178-31302249,31302525-31302596,
          31302880-31302951,31303056-31303127,31304064-31304135,
          31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 9  MSMMVYLHGCQCAIIDFYCS 68
          +S   YLHGC C ++   CS
Sbjct: 5  LSYCCYLHGCLCVLVLLLCS 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,125
Number of Sequences: 37544
Number of extensions: 34337
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 14,793,348
effective HSP length: 28
effective length of database: 13,742,116
effective search space used: 261100204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)