Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a16
         (143 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich...    26   3.2  
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    25   5.5  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    25   5.5  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    25   9.7  

>U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical
           protein W06E11.5a protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 41  MCYNRFLLFD*ERCIITRNFDFYNKMGL 124
           +C NR  +   E+C+   N   Y+K+GL
Sbjct: 118 LCLNRRTVLALEKCLDHENVSLYHKLGL 145


>AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich
           hydrophobic protein protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 41  MCYNRFLLFD*ERCIITRNFDFYNKMGL 124
           +C NR  +   E+C+   N   Y+K+GL
Sbjct: 118 LCLNRRTVLALEKCLDHENVSLYHKLGL 145


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 141 FFLTDSSPILL*KSKLRVIIHLSQSNN 61
           FF+  + PI +   KL ++I L+Q NN
Sbjct: 321 FFVKYNDPIYVKMEKLDIMIRLAQQNN 347


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 141 FFLTDSSPILL*KSKLRVIIHLSQSNN 61
           FF+  + PI +   KL ++I L+Q NN
Sbjct: 321 FFVKYNDPIYVKMEKLDIMIRLAQQNN 347


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 47  YNRFLLFD*ERCIITRNFD 103
           +NR LL    RC++TR FD
Sbjct: 388 FNRELLQRYRRCLVTREFD 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,029
Number of Sequences: 27780
Number of extensions: 40539
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)