Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a16
         (143 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   0.58 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   2.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   3.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          18   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      18   9.4  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 0.58
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 87  IIHLSQSNNRNRL*HIDIRVNK 22
           ++HL QSN  NR+ H   RVN+
Sbjct: 360 MMHLPQSNKMNRM-HRMNRVNR 380


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 2   VIYVHDGLFTRMSMCYNRFLLFD*ERCII 88
           V+++  G+F         F  FD +RC++
Sbjct: 119 VVWLSHGIFRSSCDIDVEFFPFDEQRCVL 147


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 113 YYKNQNYEL*YIFLN 69
           YY N NY+  Y  +N
Sbjct: 317 YYNNNNYKKLYYNIN 331


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 143 FFF*QIQVPFYYKNQNYEL 87
           +FF +   PF+  ++ Y+L
Sbjct: 233 YFFLRQAFPFWLPSKEYDL 251


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 143 FFF*QIQVPFYYKNQNYEL 87
           +FF +   PF+  ++ Y+L
Sbjct: 233 YFFLRQAFPFWLPSKEYDL 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,975
Number of Sequences: 438
Number of extensions: 475
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used:  2547501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)