Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a09
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    65   1e-11
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    28   1.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.3  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   7.5  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
 Frame = +1

Query: 181 NPNQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPSPGKPLDV 360
           NP   Y +     ++ VL  +  F N+HL     N +AV+  H  K EYLYPS      V
Sbjct: 33  NPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKV 92

Query: 361 RQID-----GQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRR 525
            ++D       Y  F  V+  +   +  L+ S  +  +  ++           +I + + 
Sbjct: 93  AEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSR--KTMISGALSRALAYINQVQN 150

Query: 526 SAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                LR  SRIL+ + + D A QYI  MN  F AQK+ + I+VC+++
Sbjct: 151 KNT--LR--SRILIFSLTGDVALQYIPTMNCIFCAQKKNIPINVCNIE 194


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 214 KMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLY 333
           K++T +L A V  S   L++K    L  IG H+H+ +Y Y
Sbjct: 218 KVITKILGAAVVTSIVLLLEKIF--LHFIGFHYHEVQYQY 255


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 302 PITASSLLAFCIKWELLNATTASKTFVSILGSSIMYL*LG---LVSTITTRRLLSEGTSS 132
           PI +SS L       L N T +S +  ++  SS +   +    L++  ++  LLS  TSS
Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSS 757

Query: 131 SAIAN 117
           SAI +
Sbjct: 758 SAIVS 762


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 268 MQKASNELAVIGCHFH----KSEYLYPSPGKPLDVRQIDGQYELFTLVEKTIKMRLVNLI 435
           + K  N+ A   C F+    +S+Y++P   K L  + I+  Y L   +   +   + N +
Sbjct: 640 VNKVRNDNARFDCGFNPDCFRSDYIFPPDNKELYDKDIENSYALSQYLHAEV---IPNFV 696

Query: 436 KS 441
           KS
Sbjct: 697 KS 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,048
Number of Sequences: 5004
Number of extensions: 53220
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)