Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a09
         (671 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription facto...    98   3e-20
BC065250-1|AAH65250.1|  308|Homo sapiens general transcription f...    98   3e-20
BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.       98   3e-20
BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.       98   3e-20
AF548661-1|AAN40702.1|  308|Homo sapiens general transcription f...    98   3e-20
BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for IM...    70   9e-12

>Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription factor
           2, 35 kD subunit protein.
          Length = 303

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
 Frame = +1

Query: 220 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 366
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 367 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 537
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 538 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 197


>BC065250-1|AAH65250.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
 Frame = +1

Query: 220 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 366
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 367 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 537
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 538 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 197


>BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
 Frame = +1

Query: 220 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 366
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 29  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 88

Query: 367 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 537
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 89  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 148

Query: 538 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 149 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 192


>BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
 Frame = +1

Query: 220 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 366
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 29  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 88

Query: 367 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 537
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 89  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 148

Query: 538 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 149 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 192


>AF548661-1|AAN40702.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 97.9 bits (233), Expect = 3e-20
 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
 Frame = +1

Query: 220 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 366
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 367 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 537
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 538 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 197


>BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for
           IMAGE:4724313) protein.
          Length = 235

 Score = 69.7 bits (163), Expect = 9e-12
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = +1

Query: 331 YPSPGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXX 501
           +  PG P +       DG+YEL T   + I   + +L+     + +  E+          
Sbjct: 9   FGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKAL 68

Query: 502 CFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVD 669
           C+I R  +         SRILV+  + D+A QY+N+MNV F AQK+ +LID C +D
Sbjct: 69  CYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLD 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,375,547
Number of Sequences: 237096
Number of extensions: 2060332
Number of successful extensions: 3676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)