Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a09
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   6.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   6.9  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     27   9.2  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     27   9.2  

>Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK1128.4 protein.
          Length = 345

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/50 (26%), Positives = 31/50 (62%)
 Frame = +1

Query: 517 SRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSV 666
           S +S     + ++R +V++ +    +++ + MN+FF+A K+ + +DV S+
Sbjct: 184 SEQSETASEKATNRAVVISITPIMGSEHGSLMNLFFSAAKQSICVDVVSM 233



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 229 VLDAVVAFSNSHLMQKASNELAV 297
           +L A+V+F N+HL Q A+N+L V
Sbjct: 79  ILRAIVSFCNAHLGQSANNQLLV 101


>Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical
           protein F09C3.2 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 IARSRRSAIPGLRTSSRILVVTGSADTAAQYINY 609
           IA  +   I GLR S  ++   G+ DT AQY +Y
Sbjct: 194 IADLKMGKIAGLRASVAVMTGVGTRDTLAQYSDY 227


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 208 PLLCIFDWDWCPLLPRGDCCQRAHR-RLPL 122
           P +C+  WD CPL    + C R H+ + PL
Sbjct: 90  PAICVDQWDNCPLYKLINQCTRYHKTKCPL 119


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 199  IIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHF 312
            I+ED  +L  V    V F+N+HL++K++NE  V+   F
Sbjct: 1714 IVEDYALLQAVQ---VEFANAHLVEKSANEGMVLNWEF 1748


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 199  IIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHF 312
            I+ED  +L  V    V F+N+HL++K++NE  V+   F
Sbjct: 1714 IVEDYALLQAVQ---VEFANAHLVEKSANEGMVLNWEF 1748


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 584 SALPVTTRIRLLVLKPGMALRRDLAIKQSPSAKAPASNDSPGFSS 450
           S +P   R   L L P  +++R  + K+SP+ +     DSP  +S
Sbjct: 32  SKVPSRYRNEELYLSPSRSIKRTGSPKKSPAKRLNGGRDSPSVNS 76


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 584 SALPVTTRIRLLVLKPGMALRRDLAIKQSPSAKAPASNDSPGFSS 450
           S +P   R   L L P  +++R  + K+SP+ +     DSP  +S
Sbjct: 32  SKVPSRYRNEELYLSPSRSIKRTGSPKKSPAKRLNGGRDSPSVNS 76


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 584 SALPVTTRIRLLVLKPGMALRRDLAIKQSPSAKAPASNDSPGFSS 450
           S +P   R   L L P  +++R  + K+SP+ +     DSP  +S
Sbjct: 32  SKVPSRYRNEELYLSPSRSIKRTGSPKKSPAKRLNGGRDSPSVNS 76


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 584 SALPVTTRIRLLVLKPGMALRRDLAIKQSPSAKAPASNDSPGFSS 450
           S +P   R   L L P  +++R  + K+SP+ +     DSP  +S
Sbjct: 32  SKVPSRYRNEELYLSPSRSIKRTGSPKKSPAKRLNGGRDSPSVNS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,876
Number of Sequences: 27780
Number of extensions: 302255
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)