Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a02
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    31   0.22 
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    28   1.6  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   4.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   4.7  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
 Frame = +1

Query: 298 VYKSAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFM 477
           +Y   + +   I    + + YLE+   K+    N   + ++  R ++ + NF   L + +
Sbjct: 615 LYTLLISDRYGINTNQALLCYLENSTIKNLVASNSQLRGLIMTRNSLAQHNFRRSLPEMI 674

Query: 478 VQRKKFDAANSF-VCYINKKNEELSLGAINGLLMLYYEMSKENKLIDEGKTFILKTYRDL 654
             RK  D  +    C   +K  +  +   NGL   + E  +E K  DE   F  K  + L
Sbjct: 675 SNRKICDHCSLVSECLFFQKMSDKGVANSNGLTESWNEWMREVK--DEDLEFYKKWEKLL 732

Query: 655 YKKYKVL 675
            ++ ++L
Sbjct: 733 NQEERLL 739


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 225 KLLLITHFSWLISLLLNKGINDICRYNNVLGSINK 121
           +LL+ T   WL  L++   + D+  +  ++G INK
Sbjct: 228 ELLVGTQHEWLHDLVIAMNVGDLPLFERLMGQINK 262


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 8   VSHRFESSVSEKCGLGLGLFTPLINLVKCM 97
           VS   E+S SEK  L L LF  +I+L KC+
Sbjct: 54  VSKFTENSKSEKRKLQLELFQEIIDLKKCI 83


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 523 INKKNEELSLGAINGLLMLYYEMSKENKLIDEGKTF--ILKTYRDLYKKYKVLDYTTSEK 696
           +    E L+L A N +L     MS ++  +   K    I+K Y D+   +   + TT E 
Sbjct: 206 VRNSPELLTLEAYNIVLQC---MSTDDYFLSSSKNIQKIIKVYVDMLNSFISPNVTTFET 262

Query: 697 LLHALC 714
           ++ ALC
Sbjct: 263 VIFALC 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,076
Number of Sequences: 5004
Number of extensions: 54443
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)