Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a02
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727...    33   0.30 
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    31   0.70 
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    30   2.1  
04_01_0260 - 3506672-3508981                                           29   3.7  
03_06_0290 + 32878040-32880193,32881607-32881720                       28   6.5  
01_05_0091 + 18048595-18050559                                         28   6.5  

>04_03_0454 -
           16071490-16071534,16071849-16071980,16072523-16072771,
           16075090-16075225,16077833-16078051,16079320-16079698,
           16080238-16080478
          Length = 466

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +1

Query: 307 SAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFMVQR 486
           S +    P+ CV++ +   ++ + K SF    ++ + +     I    F   +  F   R
Sbjct: 355 STLSSTVPLLCVTAAVGQGDA-VTKESFELTTVRSSAVIACAKI--MRFMNDIAAFKSGR 411

Query: 487 K-KFDAANSFVCYIN--KKNEELSLGAINGLL 573
           K K DAAN+  CYIN  K   E++L  I  ++
Sbjct: 412 KNKGDAANTVECYINEHKVTSEVALDKIESMI 443


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +1

Query: 307 SAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFMVQR 486
           S +    P+ CV++ +   ++ + K SF    ++ + +     I    F   +  F   R
Sbjct: 449 STLSSTVPLLCVTAAVGQGDA-VTKESFELTTVRSSAVIACAKI--MRFMNDIAAFKSGR 505

Query: 487 K-KFDAANSFVCYI--NKKNEELSLGAINGLL 573
           K K DAAN+  CY+  NK   E++L  I  ++
Sbjct: 506 KNKGDAANTVECYMNENKVTSEVALDKIESMI 537


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 631 ILKTYRDLYKKYKVLDYT--TSEKLLHALCC 717
           ++KTYR+L  K +V D +    EK+LH L C
Sbjct: 104 LIKTYRELLNKAQVFDLSEEAPEKVLHRLYC 134


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 364 ESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFMVQRKKFDAANSFVCYINKKNEE 543
           E+ L+     WNE+K +  F      EK     LL   +++       +F  Y   K E 
Sbjct: 565 EALLDALGEQWNEIKSSSSFNNSMTREKCLAKSLLDKEMKKNGRTPMRTFKWYQGNKTEI 624

Query: 544 LSLGAINGLL 573
           LS GA   +L
Sbjct: 625 LSPGAYLSVL 634


>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = +1

Query: 463 LLKFMVQRKKFDAANSFVCYINKKNEELSLGAINGLLMLYYEMSKENKLIDEGKTFILKT 642
           L++F+  + +FD A   + + +  N ++S+ + NG+L     + KE +    G    ++ 
Sbjct: 139 LVQFLSGKNRFDEALLVIQHASSGNFKISVSSCNGVLC---GLVKEGR----GLRPFMRA 191

Query: 643 YRDLYKKYKVLDYTTSEKLLHALCCIG 723
           Y ++ K   + D  T   L+  LC  G
Sbjct: 192 YMEVVKAGVLPDVETLNWLIEVLCEAG 218


>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 255 GITKHTCHLNKLLLITHFSWLISLLLNKGINDICRYNNVLG 133
           G     C  N   L++ F W +SLL + G N  C   + +G
Sbjct: 119 GAVLSACGRNVYELVSDFDWYVSLLTDMGRNLHCAQGDEIG 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,172
Number of Sequences: 37544
Number of extensions: 261366
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)