Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24a02
(723 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF387862-2|AAL56548.1| 942|Anopheles gambiae pol polyprotein pr... 27 0.78
U51225-1|AAA96405.1| 692|Anopheles gambiae hexamerin protein. 26 1.0
AF020872-1|AAC31875.1| 692|Anopheles gambiae hexamerin A protein. 26 1.0
AF020871-1|AAC31874.1| 692|Anopheles gambiae hexamerin A protein. 26 1.0
AF020870-1|AAC31873.1| 692|Anopheles gambiae hexamerin A protein. 26 1.0
AF387850-1|AAL58705.1| 209|Anopheles gambiae integrase protein. 26 1.4
AF387858-1|AAL58708.1| 209|Anopheles gambiae integrase protein. 25 3.1
AF387857-1|AAL58707.1| 215|Anopheles gambiae integrase protein. 25 3.1
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 23 7.2
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript... 23 9.6
>AF387862-2|AAL56548.1| 942|Anopheles gambiae pol polyprotein
protein.
Length = 942
Score = 26.6 bits (56), Expect = 0.78
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +1
Query: 511 FVCYINKKNEELSLGAINGLLMLYYEMSKENKLIDEGKTFILKTYRDLYKKYKVLDYTTS 690
F + K+ + +L +++ K +KL +GK I Y D +K ++ +D T++
Sbjct: 227 FELWYGKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLIFVGYADNHKAFRFVDPTSN 286
Query: 691 E 693
+
Sbjct: 287 K 287
>U51225-1|AAA96405.1| 692|Anopheles gambiae hexamerin protein.
Length = 692
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 382 SSFNWNELKKNILFERGNINEKNFEGVL 465
+S +W+ KN+++ R NINE F VL
Sbjct: 117 NSADWDTYYKNMIWARDNINEGMFIYVL 144
>AF020872-1|AAC31875.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 382 SSFNWNELKKNILFERGNINEKNFEGVL 465
+S +W+ KN+++ R NINE F VL
Sbjct: 117 NSADWDTYYKNMIWARDNINEGMFIYVL 144
>AF020871-1|AAC31874.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 382 SSFNWNELKKNILFERGNINEKNFEGVL 465
+S +W+ KN+++ R NINE F VL
Sbjct: 117 NSADWDTYYKNMIWARDNINEGMFIYVL 144
>AF020870-1|AAC31873.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 382 SSFNWNELKKNILFERGNINEKNFEGVL 465
+S +W+ KN+++ R NINE F VL
Sbjct: 117 NSADWDTYYKNMIWARDNINEGMFIYVL 144
>AF387850-1|AAL58705.1| 209|Anopheles gambiae integrase protein.
Length = 209
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 574 MLYYEMSKENKLIDEGKTFILKTYRDLYKKYKVLDYTTSE 693
+++ K +KL +GK I Y D +K ++ +D T+++
Sbjct: 18 IVHVPAEKRSKLDPKGKKLIFVGYADNHKAFRFVDPTSNK 57
>AF387858-1|AAL58708.1| 209|Anopheles gambiae integrase protein.
Length = 209
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 574 MLYYEMSKENKLIDEGKTFILKTYRDLYKKYKVLDYTTSE 693
+++ K +KL +GK + Y D +K ++ +D T+++
Sbjct: 18 IVHVPAEKRSKLDPKGKKLMFVGYADNHKAFRFVDPTSNK 57
>AF387857-1|AAL58707.1| 215|Anopheles gambiae integrase protein.
Length = 215
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 574 MLYYEMSKENKLIDEGKTFILKTYRDLYKKYKVLDYTTSE 693
+++ K +KL +GK + Y D +K ++ +D T+++
Sbjct: 18 IVHVPAEKRSKLDPKGKKLMFVGYADNHKAFRFVDPTSNK 57
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 23.4 bits (48), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 90 SVCMYVLRLNIYLLNLGHCCTY 155
+V + RLN+ L+N+G C T+
Sbjct: 139 AVLEHFSRLNLVLVNVGFCPTF 160
>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
protein.
Length = 1209
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = -1
Query: 249 TKHTCHLNKLLLITHFSWLISLLLNKGINDICRYNNVL 136
TK+ L +++ + ++S ++ + + D C NNV+
Sbjct: 528 TKNPAKYRPLTCLSNLNKVLSSVITQKVKDHCDTNNVM 565
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,324
Number of Sequences: 2352
Number of extensions: 12462
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -