Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24a02
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    28   7.8  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   7.8  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    28   7.8  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    28   7.8  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    28   7.8  

>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 268 HFGLGRTCRFVYKSAVKEP 324
           HFG G+ C+ +Y SA +EP
Sbjct: 338 HFGTGKACKAIYSSAYEEP 356


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 516  NKRVCSIKLFSLYHKLQENSFKIFLINVSS-FKE 418
            NK+ C+ + ++  H +QE +F+  LI +SS F+E
Sbjct: 928  NKKPCNHQQYASIHHIQEGAFRAALIKMSSMFRE 961


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 516  NKRVCSIKLFSLYHKLQENSFKIFLINVSS-FKE 418
            NK+ C+ + ++  H +QE +F+  LI +SS F+E
Sbjct: 928  NKKPCNHQQYASIHHIQEGAFRAALIKMSSMFRE 961


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 516  NKRVCSIKLFSLYHKLQENSFKIFLINVSS-FKE 418
            NK+ C+ + ++  H +QE +F+  LI +SS F+E
Sbjct: 928  NKKPCNHQQYASIHHIQEGAFRAALIKMSSMFRE 961


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 516  NKRVCSIKLFSLYHKLQENSFKIFLINVSS-FKE 418
            NK+ C+ + ++  H +QE +F+  LI +SS F+E
Sbjct: 928  NKKPCNHQQYASIHHIQEGAFRAALIKMSSMFRE 961


>AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical
           protein C49D10.10 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/70 (22%), Positives = 37/70 (52%)
 Frame = +1

Query: 409 KNILFERGNINEKNFEGVLLKFMVQRKKFDAANSFVCYINKKNEELSLGAINGLLMLYYE 588
           K+++ E   + E+  EGV++ F+ +        +F   ++K+N +   G I  + M + +
Sbjct: 307 KSVMLEYKRLPEEQCEGVVIDFLPRASTRVFVQNF---LDKENRKYVAGMIEDVKMGFID 363

Query: 589 MSKENKLIDE 618
           M +E+  ++E
Sbjct: 364 MIQESTWLNE 373


>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 50  DHIFHLQNFQIYDL 9
           +H+FHLQNF IY++
Sbjct: 212 EHLFHLQNFYIYEM 225


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 322 PAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFM 477
           PA ++ +  QI+  +SE +    NW  +KK I      +N KN   ++ + +
Sbjct: 167 PAKLRLMQQQISDKQSE-QYQRMNWERMKKKIHGLVNRVNAKNLVQIVRELL 217


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 307 SAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLL 468
           SA    +P +C++ +   L+ E+E S   + EL+K     R N  ++N +  +L
Sbjct: 430 SAANSSSPFECIALKNQTLQLEIEASEKRYQELQKETSALR-NRYQENLDATIL 482


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 322 PAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLLKFM 477
           PA ++ +  QI+  +SE +    NW  +KK I      +N KN   ++ + +
Sbjct: 167 PAKLRLMQQQISDKQSE-QYQRMNWERMKKKIHGLVNRVNAKNLVQIVRELL 217


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -2

Query: 506 FAASNFFLCTINFRRTPSKFFSLMFPLSKSMFFFNSFQLNELFSSSDSKYAI*LLTHL 333
           F ASN++   I+F       + L+F LSKS F  N   L  +F S         +THL
Sbjct: 20  FQASNYYQMIISFCSVFPLIYFLLFKLSKSSFHGN---LKTIFISYFVSLVAFSMTHL 74


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 307 SAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLL 468
           SA    +P +C++ +   L+ E+E S   + EL+K     R N  ++N +  +L
Sbjct: 430 SAANSSSPFECIALKNQTLQLEIEASEKRYQELQKETSALR-NRYQENLDATIL 482


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 307 SAVKEPAPIKCVSSQIAYLESELEKSSFNWNELKKNILFERGNINEKNFEGVLL 468
           SA    +P +C++ +   L+ E+E S   + EL+K     R N  ++N +  +L
Sbjct: 428 SAANSSSPFECIALKNQTLQLEIEASEKRYQELQKETSALR-NRYQENLDATIL 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,773
Number of Sequences: 27780
Number of extensions: 286236
Number of successful extensions: 732
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)