Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p18
         (138 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-1|AAB03159.2|  110|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    25   9.7  

>U61952-1|AAB03159.2|  110|Caenorhabditis elegans Hypothetical
           protein F42A9.6 protein.
          Length = 110

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 50  FINGYFLFYLIFQRNLIK 103
           F+ GYF F  IF + L+K
Sbjct: 26  FLGGYFFFVNIFYKELVK 43


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 34  VTFCKVY*WLFLILLNLSKKS-HKNHK 111
           ++FC V+  ++ +L  LSK S H N K
Sbjct: 30  ISFCSVFPLIYFLLFKLSKSSFHGNLK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,329
Number of Sequences: 27780
Number of extensions: 17621
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)