Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p18
         (138 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   4.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    18   9.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    18   9.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    18   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 37  TFCKVY*WLFLI 72
           +FCK + W F++
Sbjct: 290 SFCKAFPWHFVV 301


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 3   FDYYLLVLVFCDFL 44
           F+Y + V+  CD L
Sbjct: 207 FEYAMAVMKMCDIL 220


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 36  HKILILINNNQN 1
           HKI+  ++NN N
Sbjct: 79  HKIISSLSNNYN 90


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 36  HKILILINNNQN 1
           HKI+  ++NN N
Sbjct: 79  HKIISSLSNNYN 90


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 36  HKILILINNNQN 1
           HKI+  ++NN N
Sbjct: 79  HKIISSLSNNYN 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,875
Number of Sequences: 438
Number of extensions: 246
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)