Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p17
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968...    31   1.2  
11_06_0675 + 26139284-26139745,26139932-26139980,26140118-261402...    30   2.2  
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44...    29   2.9  
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998           29   3.8  
06_03_0974 - 26459747-26460190,26460278-26460946                       29   5.0  
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322...    28   6.6  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   6.6  
02_05_0035 - 25268882-25268988,25269698-25269812,25270208-252702...    28   6.6  

>07_03_0196 +
           14995224-14995489,14995859-14995877,14996703-14996839,
           14998365-14998457,15001597-15001932,15003035-15003503
          Length = 439

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 514 EGKMLTFEMGALLRKRYNDFLGPLYDAESSIVIASDTNLSKMTALLISAGLWPPPEEQLW 693
           +GK+L   MG++     + ++ P Y     + + S T++     +L+         EQ+W
Sbjct: 314 KGKLLIVAMGSI-----DQYIAPEYKIHGELELISSTDVYSFGLVLLEIACTRKDREQIW 368

Query: 694 ND 699
           ND
Sbjct: 369 ND 370


>11_06_0675 +
           26139284-26139745,26139932-26139980,26140118-26140215,
           26140378-26140588,26140707-26140947,26141051-26141216,
           26141308-26141451
          Length = 456

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 295 CCCLGVLVGISLIAALVAVILMKDTTVEVTILRQ 396
           CCCLG+   ++ +A L  + L+K     V  +RQ
Sbjct: 6   CCCLGLAANVAQLAGLDVITLVKVIKSRVETVRQ 39


>01_01_0058 +
           440328-440437,440514-440733,441605-441805,441915-441985,
           442058-442217,444166-444492,444529-444759,444869-445249,
           445573-445648,445736-445799,446334-446469,447666-447710,
           447851-447916
          Length = 695

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = -1

Query: 319 PPTRRGNSKCVRCAYPVPV*LPARWSAPPRDRPLSFFYAESAPL 188
           PPTRR NS  V   + VPV  P RW   P       F A    L
Sbjct: 14  PPTRRDNS-VVDMYHGVPVADPYRWLEDPESEDTKEFVASQVEL 56


>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
          Length = 391

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 252 AGSYTGTGYAHRTHLLLPRRVGGHLAHSRPRSSNTDE 362
           AGS  G  Y    H   PR  GGH   SR  SS   E
Sbjct: 303 AGSAAGESYFSMEHSYEPRGGGGHFVMSRGDSSELHE 339


>06_03_0974 - 26459747-26460190,26460278-26460946
          Length = 370

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 132 YLNMNYINY*KADTIGIQCRGADSA*KNE----RGRSRGGADQRAGSYTGTGYAH 284
           YLN+ +  +  AD++     GA +A + +     G   GGA Q   SYT T  AH
Sbjct: 168 YLNVEFARFPHADSVVPNGAGAGAAIELDFTCGLGVGVGGAKQSYSSYTATDLAH 222


>07_03_1702 +
           28828635-28828905,28831222-28831448,28831601-28832233,
           28832311-28832760
          Length = 526

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 466 PPEHVFSPYGAGAMTNEGKMLTFEMGAL 549
           PP H + P+GAGA T  G+  TF M  L
Sbjct: 449 PPLHAYLPFGAGARTCLGQ--TFAMAEL 474


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +1

Query: 412 SHGERTPSERELEMLGTSPPEHVFSPYGAGAMTNEGKMLTFEMGALLRKRYNDFLGPLYD 591
           S  + +P  R +    T+   H  SP+ +    N  K+   +     RK +  FLG L  
Sbjct: 789 SQKQLSPLNRIIRSTSTNDNIHSRSPFDSQQQKNLSKLTGHDEANAARKAFGSFLGTLTR 848

Query: 592 AESSIVIAS 618
            + +I  A+
Sbjct: 849 TKENIARAT 857


>02_05_0035 -
           25268882-25268988,25269698-25269812,25270208-25270276,
           25271409-25271511,25271904-25272205
          Length = 231

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 342 RSSNTDEGYYGRSHNTSTGTCVDVSWREDSK*TRTRNVRNKSSRAC 479
           R   TDE Y G+         V+ SW  + +  +T ++R+ S+ AC
Sbjct: 141 RRRKTDEHYLGKKTRDRKDKMVESSWATNRQ-VQTTDIRSPSTLAC 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,769
Number of Sequences: 37544
Number of extensions: 452469
Number of successful extensions: 1280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)