Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p17
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    99   5e-23
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    99   5e-23
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 98.7 bits (235), Expect = 5e-23
 Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
 Frame = +1

Query: 388 LRQVHVLMSHGERTPSERELEMLGTSPPEHV-FSPYGAGAMTNEGKMLTFEMGALLRKRY 564
           L+Q++V+  HG+R P E+  EM    P  +  F P   G +TN GKM  +++G  LR+RY
Sbjct: 2   LKQINVIFRHGDRIPDEKN-EMYPKDPYLYYDFYPLERGELTNSGKMREYQLGQFLRERY 60

Query: 565 NDFLGPLYDAESSIVIASDTNLSKMTALLISAGLWPPPEEQLWNDTIVWQPVPYKY 732
            DFLG +Y  ES   ++S  + +KM+  L+ A L+PP + Q WN+ + WQP+  KY
Sbjct: 61  GDFLGDIYTEESVSALSSFYDRTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATKY 116


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 98.7 bits (235), Expect = 5e-23
 Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
 Frame = +1

Query: 388 LRQVHVLMSHGERTPSERELEMLGTSPPEHV-FSPYGAGAMTNEGKMLTFEMGALLRKRY 564
           L+Q++V+  HG+R P E+  EM    P  +  F P   G +TN GKM  +++G  LR+RY
Sbjct: 17  LKQINVIFRHGDRIPDEKN-EMYPKDPYLYYDFYPLERGELTNSGKMREYQLGQFLRERY 75

Query: 565 NDFLGPLYDAESSIVIASDTNLSKMTALLISAGLWPPPEEQLWNDTIVWQPVPYKY 732
            DFLG +Y  ES   ++S  + +KM+  L+ A L+PP + Q WN+ + WQP+  KY
Sbjct: 76  GDFLGDIYTEESVSALSSFYDRTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATKY 131


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 667  WPPPEEQLWNDTIVWQPVPYK 729
            W PP  + WN  I+   V Y+
Sbjct: 997  WKPPPREDWNGEILGYYVGYR 1017


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  IRTNFVSSASSLQVFNDRILTISKYELH*LLKSRHN 175
           +  +F+ +A S   F++    +++YE+    KS HN
Sbjct: 376 LNVSFIDAAGSEVKFDEHGDGLARYEILNFRKSEHN 411


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 400  HVLMSHGERTPSERELEML 456
            H++ +HGE T  + E  ML
Sbjct: 1087 HIIQTHGEMTDKQVEAYML 1105


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  IRTNFVSSASSLQVFNDRILTISKYELH*LLKSRHN 175
           +  +F+ +A S   F++    +++YE+    KS HN
Sbjct: 466 LNVSFIDAAGSEVKFDEHGDGLARYEILNFRKSEHN 501


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 99  LYKCSMIEF*QYLNMNYINY*KADTIGIQC 188
           LY  S++   + L +N+I+    D + I+C
Sbjct: 303 LYSVSVVSLDKSLEVNHISARVGDNVEIKC 332


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 219 RGRSRGGADQRAGSYTGTGYAHR 287
           RG  +GG+  R G+   TG+ ++
Sbjct: 84  RGHGKGGSRGRGGNRGRTGFNNK 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 229 DRPLSFFYAESAPLHC 182
           DRPL  FY    P +C
Sbjct: 669 DRPLPEFYIGGNPFNC 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,644
Number of Sequences: 438
Number of extensions: 4485
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)