Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p14
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   292   4e-80
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.13 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.6  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   5.0  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   5.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   6.6  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   6.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.8  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   8.8  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   8.8  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  292 bits (716), Expect = 4e-80
 Identities = 132/202 (65%), Positives = 166/202 (82%)
 Frame = +2

Query: 146 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 325
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 326 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 505
           DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H  +  EE+GAGDQG+
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124

Query: 506 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 685
           MFGYATDET E +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184

Query: 686 QRVHTVVVSLQHSEKITLETLR 751
           +RV T+VVS QH++ I+ E LR
Sbjct: 185 RRVDTIVVSAQHADSISTEDLR 206


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 40/144 (27%), Positives = 65/144 (45%)
 Frame = -3

Query: 561 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 382
           S++ +    SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235

Query: 381 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 202
             SS P   + S +T   S  +    S   S+     ++S ++ +S S    +S I+S  
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292

Query: 201 WSHILSG*PSPTDSDVNKNTDPSS 130
            S   S  P+ T S ++ ++  SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/104 (20%), Positives = 50/104 (48%)
 Frame = -3

Query: 726 SECCSDTTTV*TLCGTVAPPANTYSQVTCVFESGLAHQNSPFRLSSAIF*LSLCASTTVN 547
           S   S +++  ++  + +  +++ +  +    S  +  +SP   SS I      +S++ +
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS----SSSSSSS 315

Query: 546 GMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSAS 415
              S++SS +  +   +S +PTSSS   S + ++     +SS +
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTT 359


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +2

Query: 50  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 226
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L  
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692

Query: 227 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 325
                   K   E        L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 700 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 578
           S +SL D  TT ++IF+ NL   +W   P    +I P+  N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 639 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 520
           +F  G A++  N+PF +S +++  S   +T ++G+H  V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 182 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 286
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 418 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 293
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 314 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 433
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
 Frame = -2

Query: 628 WSCPPKFSISPELCNFLIEF---------VCKHYSQRHAFFCLICCITEHQAL 497
           W C PK  ++   C FL  F           KH ++R    C  C +  HQ+L
Sbjct: 46  WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQSL 97


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 202 LVAHFVWMTLANRFRCEQKY*SIFHII 122
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 609 SPFRLSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 460
           +P+   + +F +S+  S+T    G+  S+  +    + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 449 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 330
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,869
Number of Sequences: 5004
Number of extensions: 76114
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)