Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p11
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    30   1.7  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    30   2.2  
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594...    29   5.2  

>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 366 KEHCNNCNEIYCYNSTAQRM 307
           K HC  C  ++C N T QRM
Sbjct: 86  KHHCQRCGGLFCSNCTQQRM 105


>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
            22180939-22181169,22181250-22181805,22181896-22182312,
            22182405-22183216,22183653-22183738,22184464-22184534,
            22184553-22185573,22186018-22186062,22186252-22186326,
            22186797-22186871
          Length = 1557

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 652  TTELEYDAVNNS-FNTLNGPLNGLVILTNLPELLHENIYECVI 527
            +TEL    +N+S    +NGP+N LV    +P+ L  ++ EC +
Sbjct: 1191 STELLVKGMNHSPLEQINGPVNQLVCSPKMPQSLGIDLNECPV 1233


>08_02_0644 -
           19658270-19658626,19659142-19659218,19659256-19659430,
           19659543-19659596,19659691-19659858,19660756-19660953,
           19661546-19661632,19661739-19661827,19662499-19662955
          Length = 553

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 585 RPFNGPLSVL-NELFTA-SYSNSVVGIHLYLTYLNSVSSTTYPSTDTVM 725
           R F GPL    ++ FT  SY++++ G H  L  +NS   + + +T  V+
Sbjct: 250 RAFRGPLKPQKDQSFTPMSYTSTIPGQHFALLLINSEEGSKFQATGAVL 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,199
Number of Sequences: 37544
Number of extensions: 276847
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)