Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p09
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...   103   8e-23
Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical pr...    37   0.014
U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related...    32   0.29 
AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical ...    31   0.90 
U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    29   2.7  
U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    28   4.8  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    28   4.8  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   4.8  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   4.8  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   4.8  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    28   4.8  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score =  103 bits (248), Expect = 8e-23
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
 Frame = +3

Query: 108 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRT 278
           ++   ++ + +A GIAG  FLGYC+YFD +R   P +K K+R++R     A   A R   
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64

Query: 279 LGG--PVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVL 452
             G    PD+ D   MQRFFLQ++Q                H+  AV +CG+++QLLS+ 
Sbjct: 65  AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124

Query: 453 QQTMPAPIFHLLLKKLPEVSERLRSSMKARSNVMQEE 563
           QQT+    F  ++++LP   ERL     A+++  + E
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161


>Z81522-3|CAB04234.2|  167|Caenorhabditis elegans Hypothetical
           protein F32B4.2 protein.
          Length = 167

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
 Frame = +3

Query: 135 GIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 293
           G+ VG A  L +    Y+ Q+++          E       ++S  R  GG        +
Sbjct: 13  GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72

Query: 294 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXX-VEHLGQAVAVCGQTEQLLSVLQQTMPA 470
            D N     ++ F++Q+                  H+  A+ + G+T QLL VL+ ++  
Sbjct: 73  EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132

Query: 471 PIFHLLLKKLPEVSERLRSSMK 536
             F  + K LP    R+   ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154


>U39999-3|AAR85904.2|  114|Caenorhabditis elegans Insulin related
           protein 15 protein.
          Length = 114

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 107 NDGNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKTKCTTKC 262
           ND   ++N  +S R+CG ++   +  L      G A+Q E+ RA   C+T C
Sbjct: 23  NDFQPRDNKHHSYRSCGESLSRRVAFL----CNGGAIQTEILRALDCCSTGC 70


>AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.3 protein.
          Length = 745

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 165 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 317
           F  YC +  QQ R + + ++K  ERRL   ++ +AS++R  GG  P     E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257


>U28731-5|AAA68299.1|  125|Caenorhabditis elegans Hypothetical
           protein F12A10.6 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 274 RDLEAFCCAFSLRSLNFFLNSGSLRLCWS----KYTQ*PKNSVPAI 149
           RD E    A  +       NSG+L +CW     ++   P+NS+PAI
Sbjct: 51  RDKEKVRQAVEMVGAAKIFNSGNLPICWKFQFRQFADLPENSIPAI 96


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 410 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 318
           SL  + ++SF+ + S++ F + NL+QEK  H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713


>U61950-7|AAL02467.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform c protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 9   DITNESRNRCRACRLRNCLEGGMNPKH 35


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 142 DITNESRNRCRACRLRNCLEGGMNPKH 168


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 190 DITNESRNRCRACRLRNCLEGGMNPKH 216


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 EEQRNAGRRCRIKNCV 586
           +EQRNA R CR+K C+
Sbjct: 68  KEQRNACRSCRLKECI 83


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 EEQRNAGRRCRIKNCV 586
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 EEQRNAGRRCRIKNCV 586
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 EEQRNAGRRCRIKNCV 586
           +EQRNA R CR+K C+
Sbjct: 76  KEQRNACRSCRLKECI 91


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 139 DITNESRNRCRACRLRNCLEGGMNPKH 165


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 148 DITNESRNRCRACRLRNCLEGGMNPKH 174


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 530 DEGEEQRNAGRRCRIKNCVFEEMKVKH 610
           D   E RN  R CR++NC+   M  KH
Sbjct: 141 DITNESRNRCRACRLRNCLEGGMNPKH 167


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 539 EEQRNAGRRCRIKNCV 586
           +EQRNA R CR+K C+
Sbjct: 88  KEQRNACRSCRLKECI 103


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 442 LVYFSKLCQLQSSICFLRSCQKFQNAS 522
           L+YF  +C L S IC ++SC     AS
Sbjct: 174 LIYFQGVCTLCSLICNIKSCSIVWKAS 200


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 420 KQLQPARDVRLQLQDHLQPATLRRVESVARKISA 319
           KQL   RD R++ +DHL    L   E   R +SA
Sbjct: 93  KQLDLERDCRIRNKDHLDRLLLEHQERYKRNLSA 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,787
Number of Sequences: 27780
Number of extensions: 289429
Number of successful extensions: 1043
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)