Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23p03
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1090 + 24254172-24254624                                         27   8.5  
05_07_0203 + 28391707-28392165                                         27   8.5  
03_02_0560 + 9462996-9463454                                           27   8.5  
01_06_1288 - 36007432-36007851                                         27   8.5  
01_01_0366 + 2871188-2871655                                           27   8.5  
01_01_0364 - 2856598-2857059                                           27   8.5  
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284...    27   8.5  
01_01_0360 - 2837046-2837507                                           27   8.5  
01_01_0358 - 2819235-2819696                                           27   8.5  
01_01_0331 + 2685802-2686263                                           27   8.5  
01_01_0329 + 2673479-2673940                                           27   8.5  

>08_02_1090 + 24254172-24254624
          Length = 150

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 72  KQVHPDIGISSKAMSIMNSFINDIFE 97


>05_07_0203 + 28391707-28392165
          Length = 152

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 74  KQVHPDIGISSKAMSIMNSFINDIFE 99


>03_02_0560 + 9462996-9463454
          Length = 152

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 74  KQVHPDIGISSKAMSIMNSFINDIFE 99


>01_06_1288 - 36007432-36007851
          Length = 139

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 61  KQVHPDIGISSKAMSIMNSFINDIFE 86


>01_01_0366 + 2871188-2871655
          Length = 155

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 77  KQVHPDIGISSKAMSIMNSFINDIFE 102


>01_01_0364 - 2856598-2857059
          Length = 153

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFE 100


>01_01_0362 -
           2843659-2844468,2844669-2844699,2844824-2844903,
           2846680-2847831
          Length = 690

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 612 KQVHPDIGISSKAMSIMNSFINDIFE 637


>01_01_0360 - 2837046-2837507
          Length = 153

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFE 100


>01_01_0358 - 2819235-2819696
          Length = 153

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFE 100


>01_01_0331 + 2685802-2686263
          Length = 153

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFE 100


>01_01_0329 + 2673479-2673940
          Length = 153

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 EQVYPDXDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S K   ++N F+ND  E
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFE 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,963,786
Number of Sequences: 37544
Number of extensions: 160842
Number of successful extensions: 276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)