Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23o23
(219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 0.25
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 0.44
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 1.0
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 1.4
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 24 2.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 2.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 24 3.1
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 23 4.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 23 4.1
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 23 4.1
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 5.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 23 5.5
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 23 5.5
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 23 5.5
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 23 5.5
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 23 7.2
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 23 7.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 23 7.2
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 23 7.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 22 9.6
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 22 9.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 22 9.6
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 22 9.6
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 0.25
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 53 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 178
DL +ANR L ANE + +RD R+D + +R+ QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 0.44
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 8 AKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLAN 178
+KID LT+KL VAN AE N +L A E + + + + +E Q N
Sbjct: 621 SKIDSLTEKLKVAN---AEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQSTN 674
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 83 LFANEMIVARRDAETARQDCE 145
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 216 GLAITSCAMSAMRLASCAVSRRAFSQS 136
GL+ + A M A C++S AF+QS
Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQS 140
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 93 TK*LWLDATLKRLGKIAKTRAAKRRSWPTAWRTL 194
TK + +D L++ KIAK + + R +AWR L
Sbjct: 89 TKLMKIDEVLEK-AKIAKAKGSTRFCMGSAWRDL 121
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 176 WPA-APFRGARFRNLAEPFQRRVEPQSFRWQ 87
WP +P R +F N RRVE + F WQ
Sbjct: 1161 WPTMSPLR--QFPNCPSEVIRRVEKKEFPWQ 1189
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 53 LRWPPSIFASDRQF 12
L++PPS F S RQF
Sbjct: 222 LQYPPSSFGSQRQF 235
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 212 WLSRLAQCPPCGWPAAPFRG 153
W+SR CP CG P G
Sbjct: 175 WISRYRFCPGCGKRNIPTMG 194
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 ARRDAE--TARQDCENARRETAQLANRMAD 190
A+R+AE R+ ENA+RE + A R A+
Sbjct: 585 AKREAEEKAKREAEENAKREAEEKAKREAE 614
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 ARRDAE--TARQDCENARRETAQLANRMAD 190
A+R+AE R+ ENA+RE + A R A+
Sbjct: 649 AKREAEEKAKREAEENAKREAEEKAKREAE 678
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 41 VANADLAEANRSLILFANEMIV 106
++NAD + +LILF N +V
Sbjct: 257 ISNADFQDKKSNLILFINNRLV 278
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 59 PNLRWPPSIFASDRQFWQ 6
P+L +P S F+S +FW+
Sbjct: 92 PSLVYPSSSFSSTSKFWR 109
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 130 SRFSVASSHNHFVGKQNERS 71
S FS + SHNH Q E+S
Sbjct: 537 SPFSKSKSHNHHPSSQVEKS 556
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -3
Query: 73 SVGFRQICVGHRQFLRQIVNF 11
S+ FRQ+C+ Q + + F
Sbjct: 378 SISFRQVCIAETQLQQYFLRF 398
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 81 MSDRLASAKSALATVNFCVRSSILA 7
+ DRL SA+S T C+ ++ LA
Sbjct: 128 IKDRLVSAQSISGTGALCIAANFLA 152
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 115 RR*NGSARLRKRAPRNGAAGQPHGGH 192
R G R R R R+G G GGH
Sbjct: 442 RNPGGPNRQRYRGRRDGRGGNTGGGH 467
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 121 SVASSHNHFVGKQNERSVGFRQICVGHRQFLRQIVNFGNN 2
SVA +HFV N + + ++ G F Q N ++
Sbjct: 574 SVAKEISHFVHTTNRKHISPKKAVTGQSWFDHQYENLASS 613
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 64 SQPIAHFVCQRNDCGSTRR*NGSARLRK 147
+ P++H++ N G ++ + AR+RK
Sbjct: 241 NNPLSHWIVSCNVIGGEKKKSEKARIRK 268
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 207 ITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSA 49
+ S +S AS FS+ + + A+RRA+ + + DRL+ S+
Sbjct: 367 VLSTFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSS 419
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 204 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIIS 94
TSCA+S+ ++ A+ + + AVS ++RA +S
Sbjct: 229 TSCALSSAVASNLAIGLDLVTATQNAVSYTQRALEMS 265
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 57 WRKPTDRSFCLPTK*LWLDATLKRLGKIAKTRAAKRR 167
W+KP RSF L + + D ++ K KR+
Sbjct: 456 WKKPDARSFILDCEAVGWDRDENKILPFQKLATRKRK 492
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -3
Query: 139 ILPSRFSVASSHNHFVGKQNERSVGFRQICVGHRQFLRQIVNFG 8
+LP+ F + + + +QN F+++ G+R + IV++G
Sbjct: 303 LLPTIFEIDALFSSTPLRQNMPQHMFQRLKEGYRNIIIAIVDYG 346
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 126 VSASRRATIISLANKMSDRL 67
V+ RR + ISLAN++S L
Sbjct: 683 VTEPRRISAISLANRVSQEL 702
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 151 RVFAILPSRFSVASSHNHF 95
RVF +LP S+ S H+ F
Sbjct: 799 RVFPLLPKNISMKSYHSLF 817
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 906,763
Number of Sequences: 5004
Number of extensions: 14625
Number of successful extensions: 50
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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