Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23o22
(294 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 89 2e-18
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 89 2e-18
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 89 2e-18
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 89 2e-18
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 29 2.0
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 29 2.0
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 29 2.0
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 29 2.0
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 29 2.0
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 29 2.0
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 29 2.0
BC034740-1|AAH34740.1| 381|Homo sapiens TRPV5 protein protein. 28 6.2
AY206695-1|AAO13488.1| 729|Homo sapiens transient receptor pote... 28 6.2
AJ487965-1|CAD32312.2| 729|Homo sapiens transient receptor pote... 28 6.2
AJ271207-1|CAB96365.2| 729|Homo sapiens epithelial calcium chan... 28 6.2
AF304464-1|AAL04015.1| 729|Homo sapiens calcium transport prote... 28 6.2
BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein... 27 8.2
BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein. 27 8.2
AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein... 27 8.2
AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens ... 27 8.2
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +3
Query: 48 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 950 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 1540 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 269 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 404 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 636 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 1517 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 36 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
K+ K + S+N ++N RK + KKP+KT + +D
Sbjct: 928 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967
>BC034740-1|AAH34740.1| 381|Homo sapiens TRPV5 protein protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HFCELCGFGYDLYDSLTLPF*CVFNPLRFRGQNRS 1
+FC L Y LY + CV+ PL+FRG NR+
Sbjct: 328 YFCILAAL-YLLY-MICFTTCCVYRPLKFRGGNRT 360
>AY206695-1|AAO13488.1| 729|Homo sapiens transient receptor
potential cation channel, subfamily V, member 5 protein.
Length = 729
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HFCELCGFGYDLYDSLTLPF*CVFNPLRFRGQNRS 1
+FC L Y LY + CV+ PL+FRG NR+
Sbjct: 328 YFCILAAL-YLLY-MICFTTCCVYRPLKFRGGNRT 360
>AJ487965-1|CAD32312.2| 729|Homo sapiens transient receptor
potential cation channel subfamily V, member 5 protein.
Length = 729
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HFCELCGFGYDLYDSLTLPF*CVFNPLRFRGQNRS 1
+FC L Y LY + CV+ PL+FRG NR+
Sbjct: 328 YFCILAAL-YLLY-MICFTTCCVYRPLKFRGGNRT 360
>AJ271207-1|CAB96365.2| 729|Homo sapiens epithelial calcium channel
protein.
Length = 729
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HFCELCGFGYDLYDSLTLPF*CVFNPLRFRGQNRS 1
+FC L Y LY + CV+ PL+FRG NR+
Sbjct: 328 YFCILAAL-YLLY-MICFTTCCVYRPLKFRGGNRT 360
>AF304464-1|AAL04015.1| 729|Homo sapiens calcium transport protein
CaT2 protein.
Length = 729
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 105 HFCELCGFGYDLYDSLTLPF*CVFNPLRFRGQNRS 1
+FC L Y LY + CV+ PL+FRG NR+
Sbjct: 328 YFCILAAL-YLLY-MICFTTCCVYRPLKFRGGNRT 360
>BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein 1
protein.
Length = 963
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 43 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
+ W S R A+L ++S Q PG PP AW
Sbjct: 849 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 885
>BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 43 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
>AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein
protein.
Length = 962
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 43 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
+ W S R A+L ++S Q PG PP AW
Sbjct: 848 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 884
>AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens
cDNA FLJ20401 fis, clone KAT00901. ).
Length = 317
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 43 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,855,108
Number of Sequences: 237096
Number of extensions: 810082
Number of successful extensions: 1919
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -