Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o17
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    89   7e-19
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    31   0.19 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   0.58 
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    27   4.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.4  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   7.1  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   7.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.4  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 89.0 bits (211), Expect = 7e-19
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
 Frame = +1

Query: 172 FTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYS 351
           F+  +Y W+ YL  RQ+  Y      P  L E ++E  ++KA  Y  DK+ F  +   ++
Sbjct: 55  FSIGKYAWDLYLRRRQVP-YLLREKPPAILAEHVDEKKYQKALSYARDKSWFSTIVSTFT 113

Query: 352 TILTSVILYNKWIYVAWRKS-----EQIGAMFN-ISPDREIIISCIFMTFITLFNFIVNK 513
             +  +I+    +   W  +     +++ A  +  S    I  SC+FM  +TLF+ ++  
Sbjct: 114 LAVDLLIIKYDGLSYLWNITKFPWMDKLAASSSRFSLSTSITHSCVFMFGLTLFSRLIQI 173

Query: 514 PFTIYGVFVLEERHGFNKQTVRFFIKDQIKSLFLSLVITLPIISVAIYIIMLGGDMF 684
           PF +Y  FV+EE++GFNK T++ F+ D +K L L  ++   ++ V + I+   GD F
Sbjct: 174 PFNLYSTFVIEEKYGFNKSTLKIFVIDLLKELSLGGLLMSVVVGVFVKILTKFGDNF 230


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 224 RFTKLIIPSQKT*KKCSMRTCLRRHDFMELIKRSSK*SRN 343
           +F  ++ P  +T +KC  R C   HDF    K S   S N
Sbjct: 7   QFKHIVCPFLRTGRKCQSRNCFFSHDFQNSTKISPPYSEN 46


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 436 ISPDREIIISCIFMTFITLFNFIVNKPF-TIYGVFV-LEERHGFNKQTVRFFIKDQIKSL 609
           ++P+   +  C+F   +T F+ +V  PF TI GV   L   + F    V        K+ 
Sbjct: 432 LTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGVVCWLASTYSFCDGIVNKDTVMTSKAC 491

Query: 610 FLSLVITLPIISVAIYIIML 669
           F+  ++++   S  +YI++L
Sbjct: 492 FVGNIVSM--ASSPLYIVLL 509


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +1

Query: 265 EMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNKWIYV 396
           ++ N D+ ++      + ++F  +      + T +I +NKWIY+
Sbjct: 31  KLRNGDVLQEVTESLTEDSEFNYIVNESQNVSTRLIFWNKWIYI 74


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +1

Query: 229  YKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNKWIYVA 399
            Y  N +IP+ L  + N   F  + +  +     ++  +LY   + S++ +    Y+A
Sbjct: 4055 YFENLSIPKPLPFLSNNGKFMSSMMSTVSLPSVRLACQLYGVSIQSLVFFTWGYYIA 4111


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +1

Query: 205 LSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNK 384
           +S R L I K NN  P  L +  NE L K A     +++    + E ++TIL  V L + 
Sbjct: 209 ISTRSLLI-KNNNFAPF-LLDAWNEPLLKSAGFDQAERSALSHLLEAHNTILDHVALVSP 266

Query: 385 WIYVAWRKS 411
            +  ++  S
Sbjct: 267 KVLNSYTNS 275


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 660 NNAWRRHVCGVAMAIYYCCNTPTVNIISNSHSPTGLTNLYLYLMD 794
           N +W   V  +   IY CC TP  + +SN+ S     +LY ++ D
Sbjct: 384 NKSWE--VVFLTSVIYSCCKTPAAS-VSNTFS--SYKSLYDFIYD 423


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 597 NKITIFKFSDYITNNICSNLYNNAWRRHVCGVAMAIYYCCNT 722
           NK    +  +  + N   + YNN W+     + MA+ Y  N+
Sbjct: 310 NKFIGQRLMETYSRNKRKHYYNNDWQIKSAAITMALLYSANS 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,344
Number of Sequences: 5004
Number of extensions: 61519
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)