Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o17
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844...   122   3e-28
10_07_0147 + 13404711-13404764,13404865-13405232,13406105-134061...    29   4.3  
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467...    29   5.6  
06_03_0915 - 25929433-25930893                                         28   7.4  
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253...    28   9.8  
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    28   9.8  

>02_05_0311 +
           27782110-27782326,27784121-27784268,27784394-27784478,
           27784555-27784650,27785666-27785731,27785900-27785998,
           27786145-27786258,27786468-27786578,27786672-27786734,
           27786816-27786908,27787960-27788073,27788440-27788505,
           27788782-27788994,27789086-27789116,27789459-27791587
          Length = 1214

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/168 (32%), Positives = 105/168 (62%)
 Frame = +1

Query: 172 FTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYS 351
           F  + Y++E YL +RQ +  K   T+P+ L  +++ + F+++R Y +DK++F  + E  +
Sbjct: 74  FMILMYIFETYLDIRQHRALKLP-TLPKPLVGVISGEKFERSRAYSLDKSKFHFIHEAVT 132

Query: 352 TILTSVILYNKWIYVAWRKSEQIGAMFNISPDREIIISCIFMTFITLFNFIVNKPFTIYG 531
            ++ + ILY + +   W+KS ++     ++ + EI+ +  F+  + +++ I + PF++Y 
Sbjct: 133 ILMDTTILYYRVLPWVWKKSGELATNAGLNAENEILHTLAFLAGVMIWSQITDLPFSLYS 192

Query: 532 VFVLEERHGFNKQTVRFFIKDQIKSLFLSLVITLPIISVAIYIIMLGG 675
            FV+E +HGFNKQT+  FI+D IK + LS+++  PI++  I I+  GG
Sbjct: 193 TFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGG 240


>10_07_0147 +
           13404711-13404764,13404865-13405232,13406105-13406153,
           13406374-13406470,13406863-13407011,13407554-13407667,
           13408196-13408327,13409143-13409256,13410233-13410454
          Length = 432

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 483 KCHKNATYNYLSIWRDVEHCSNLFTF 406
           K  K++ YNY+  WR++   SNL TF
Sbjct: 365 KAIKSSPYNYVRTWRNMHKQSNLPTF 390


>01_05_0132 -
           18446105-18446197,18446281-18446372,18446684-18446783,
           18446855-18447046,18447216-18447536,18447848-18447943,
           18448006-18448098,18448181-18448306,18448358-18449053,
           18449130-18449162
          Length = 613

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 473 KMQLIIISLSGEMLNIAPICSLFLHAT*IHLLYNITDVSIVLYSSLTILNCALSI 309
           K Q ++ ++    L + P    F+H+  ++LL NI D+    ++SLT+ +   SI
Sbjct: 160 KRQFVLYTIG---LILCPTTERFVHSDYLNLLINIADIKRTNWASLTLNHLKRSI 211


>06_03_0915 - 25929433-25930893
          Length = 486

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 481 FITLFNFIVNKPFTIYGVFVLEERHGFNKQTVRFFIKDQIKSLFLSLVITLPIISVAIYI 660
           F ++ NFIV   + I+ V V    H   +QTV   I  ++       ++TL ++ +A  +
Sbjct: 349 FSSILNFIVRIGYVIHLVLVFPVVHFSLRQTVDSLIFGELAPHSRKKMLTLTVVLLA--L 406

Query: 661 IMLGGDM 681
           I LG  M
Sbjct: 407 IYLGSTM 413


>06_03_0598 +
           22621765-22624795,22624903-22625066,22625290-22625328,
           22625479-22625487
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 589 KDQIKSLFLSLVITLPIISVAI 654
           K + KSL L LVI +PIIS+AI
Sbjct: 760 KRRHKSLVLVLVIVIPIISIAI 781


>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 549 FLKNKHTINGKWFVNNKVEQCNKCH 475
           F   K T++ KW +NN    C+KC+
Sbjct: 514 FHATKMTVDDKWTLNNPCYFCDKCY 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,677
Number of Sequences: 37544
Number of extensions: 323146
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)