Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o09
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...   109   3e-25
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...   109   3e-25
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    64   3e-11
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   6.8  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score =  109 bits (263), Expect = 3e-25
 Identities = 52/110 (47%), Positives = 68/110 (61%)
 Frame = +3

Query: 24  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 203
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 204 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 353
           KG  EE               IVGA+L  I  KRN +PEVR A R  A+K
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score =  109 bits (263), Expect = 3e-25
 Identities = 52/110 (47%), Positives = 68/110 (61%)
 Frame = +3

Query: 24  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 203
           MK+ +C++SG K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 204 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 353
           KG  EE               IVGA+L  I  KRN +PEVR A R  A+K
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 24  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 203
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 204 K 206
           K
Sbjct: 61  K 61


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 551  SWLKYVKKKVKHQ-EVRKRLFHL 616
            +WLKY KKK K+Q +V+ R  HL
Sbjct: 1251 NWLKYAKKKWKYQKQVKLRRRHL 1273


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 110 EGFSIHFNHGLAMAWIYFVSTI 45
           +GF  H+  G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,415
Number of Sequences: 5004
Number of extensions: 57575
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)