Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o08
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   3.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   6.6  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.8  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 81  LXKILXTMSILIKQCWIFXFKSIVIXR*NRGNXLI 185
           + K+L    IL + CWI  FKS  I    R N ++
Sbjct: 895 IEKLLNPDEILFRFCWINKFKSFGIKIMKRANLIV 929


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 212 ELTDSSPPESASKFTSXTLHKLA 280
           E TDSS P S  +F   +LHKL+
Sbjct: 547 ENTDSSLPPSKKEFIEKSLHKLS 569


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 484 KQYTLHTKTHPIDA----LLSSTRTIHTLTTAASRSS 386
           K+YT+ +KTH  DA    L+S TR +  L T     S
Sbjct: 578 KRYTMLSKTHKFDASSVDLVSLTRIMERLQTRVEYQS 614


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 439 LSST-RTIHTLTTAASRSSR-LVVCDHQLAKLSLHNNVLSNSP 317
           LS T RT  T +   S SSR LV  D  LA   L   VLS SP
Sbjct: 22  LSQTQRTSSTSSLKKSASSRRLVYGDDMLAPKPLAGQVLSKSP 64


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 445  ALLSSTRTIHTLTTAASRSSRLVVCDHQLAKLSLHNNVLSNSPTK 311
            ++LSSTR I + +TA+ RSS L     +L+   L  +  S+S ++
Sbjct: 3607 SVLSSTRAIESESTASHRSSVL----SELSSYDLSTSAFSSSSSE 3647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,698
Number of Sequences: 5004
Number of extensions: 31588
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)