Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o08
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38772| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)              29   4.0  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 28   7.0  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         28   7.0  
SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)                   27   9.2  

>SB_38772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 612 RGGYRAIRFATTAVGARRCPSRSLRHRHCRFRDEILRVQPSQ*NNTHYTRRRIQSTHYCP 433
           RGG+R +R     +  +  P  SLRH  CRF    L +   + ++  Y  +   ST   P
Sbjct: 33  RGGFR-VRHRLPLLRLQSLPGASLRHVRCRFGLGDLALPLFRPSHYTYVLQETSSTGLFP 91

Query: 432 RLA 424
           R A
Sbjct: 92  RAA 94


>SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)
          Length = 315

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 209 WELTDSSPPESASKFTSXTLHKLASQYLNFLXFMLCGTVTQHVVVQR 349
           W L  SSPP S  +  S +LH+++  Y++ L  +LC   T   + QR
Sbjct: 60  WGLVPSSPPLSKDRKQSSSLHEMS--YVDVL--LLCRDCTHKNIKQR 102


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -1

Query: 508  PSRSTITIKQYTLHTKTHPIDALLSSTRTIHTLTTAASRSSRLVVCDHQLAKLSLHNNVL 329
            PS +T      +L T    I  L +S  +I +LTT+      L   +  +  L+ HN  +
Sbjct: 929  PSLTTSNESIPSLTTSNKSIPPLTTSNESISSLTTSNESIPSLTTRNESIPFLTTHNESI 988

Query: 328  SNSPTKHE 305
             +  T +E
Sbjct: 989  PSLTTSNE 996


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 505  SRSTITIKQYTLHTKTHPIDALLSSTRTIHTLTTAASRSSRLVVCDHQLAKLSLHNNVLS 326
            S  T+T   +T HT T     + ++T T   +TTA   ++   V        S H    +
Sbjct: 1758 STGTLTSTHHTTHTSTETSTHVTTATETATEVTTATQVTTETAVSTAVQTLTSTHVTTAT 1817

Query: 325  NS 320
            N+
Sbjct: 1818 NT 1819


>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 502 RSTITIKQYTLH-TKTHPIDALLSST-RTIHTLTTAASRSSRLVVCDHQLAKLSLHNNVL 329
           R  I + +Y++   K+  I+ LL ST R        A+R++++V C H   ++  ++  +
Sbjct: 156 REMICLLEYSIKGKKSEEINNLLHSTNRATKCKCGRAARTTKMVTCQHDDHQILANDAAV 215

Query: 328 SNSP 317
            N P
Sbjct: 216 FNGP 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,703,011
Number of Sequences: 59808
Number of extensions: 261538
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)