Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o08
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 612 RGGYRAIRFATTAVGA 565
           R GY   RFA TA+GA
Sbjct: 401 RSGYSVARFAETALGA 416


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 514  RDPSRSTITIKQYTLHTKTHPIDALLSSTRTIHTLTTAAS 395
            R PS+    I QYT++TK    +   S     + LT  AS
Sbjct: 1201 RPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHEAS 1240


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 412 LTTAASRSSRLVVCDHQLAKLSLHNN 335
           L TAA+ S   ++ + Q+ K S+HNN
Sbjct: 564 LNTAATLSFCEMIHNAQVNKRSIHNN 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,439
Number of Sequences: 438
Number of extensions: 2216
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)