Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23o05
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 124 1e-29
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 31 0.22
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 30 0.38
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 29 0.50
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.66
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 28 1.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.5
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 27 2.7
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.5
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 4.7
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 4.7
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.2
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 26 6.2
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 25 8.2
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.2
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 25 8.2
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 124 bits (300), Expect = 1e-29
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Frame = +2
Query: 224 SEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 403
SEED +L+ +L +LV + +L +L L +IRTST+SMT+VPKPLKFLR HY
Sbjct: 47 SEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFT 106
Query: 404 LKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYV 583
L ++Y+ K AD++SVL M S T K E LKY L G ++ WGHEYV
Sbjct: 107 LVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSLWGHEYV 162
Query: 584 RQLEGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLME 718
R L EI EE+ D L+ L ++ F + H+AE A DLL E
Sbjct: 163 RHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQE 212
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 30.7 bits (66), Expect = 0.22
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Frame = -2
Query: 684 ECFMSNVITSRTSGNNESMFSIFHSSAIS-PSNCLTYSCPQSPTFDNVPRRQYFKHSLFS 508
E ++ N I S NN S+ I + +S S +T CP+ P F V ++F H+ +
Sbjct: 1068 EIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREP-FKLV--LEFFGHADTN 1124
Query: 507 ATSRVPLTPIAKTEITSAQNFFVFSSVIFSYTCFNAG*CSLRNFRGLGTEVIDVVDVLMR 328
++ T + TS+ N + CFN C + R + + ++ +R
Sbjct: 1125 MRYKISWTQLNTQANTSSFNGLILDGPEEDIVCFNNSKCHVVIERNMFAYTTGMYNIFVR 1184
Query: 327 LLS 319
+ +
Sbjct: 1185 IFN 1187
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.38
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Frame = +2
Query: 197 KKMSASSATSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPL 376
+++ +S +SEED L+ V L+ V+ P++ L I + +M + L
Sbjct: 1774 EELFSSLKSSEEDFALRTRC---VTSLM--LVNSKHPSMSALCRFIIYKSVTMLQNGEVL 1828
Query: 377 K---FLREHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGT 547
K ++ E PAL ++ I +EK K F + I + A S +E A+ R+ + LL
Sbjct: 1829 KSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPI-AAHFSILVEHADARKRIGEKLLKI 1887
Query: 548 LSNVGDWGHEYVRQL---EGEIAEEWNIENMD 634
++ D ++QL + + EE I+N++
Sbjct: 1888 MAIQPDEAKAIIQQLSPRQKKCVEEILIQNVE 1919
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 230 PRTLQ-SWHSFSLGRKKSANST*QMLYDCN*ITERA*NRKQKRETIKTR 87
PRTLQ H F+L R+++ + + + +R KQKRE +K R
Sbjct: 184 PRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKAR 232
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 227 EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 385
EE + LQEE+N++ K L + V+ Y L M+ +L + +S++ + +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 230 PRTLQ-SWHSFSLGRKKSANST*QMLYDCN*ITERA*NRKQKRETIKTR 87
PRTLQ H F+L R+++ + + + +R KQK+E +K R
Sbjct: 184 PRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKAR 232
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 296 LYFPALQM-LSNLIRTSTTSMTSVPKPLKFLREHY-PALKQVYEKITDEKTKKFCADVIS 469
++FPA + ++ +I TS + + FL H P L+ +YE + +EK++ F + S
Sbjct: 204 VFFPAAKATITQMIETSIRFLRT------FLDMHIKPQLQHIYESVVEEKSEAFASATSS 257
Query: 470 VLAMGVSGTL 499
+ +S ++
Sbjct: 258 KILSEMSASM 267
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 27.1 bits (57), Expect = 2.7
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Frame = +2
Query: 197 KKMSASS---ATSEEDKRLQEELNMLVDKLLGNEVDLYFP-ALQMLSNLIRTSTTSMTSV 364
K++ ASS ATS+ K+ + NM L ++ D Y+P L L+RT+ +
Sbjct: 132 KELEASSTGDATSDLSKQTFDSENMGEHAWLKSDRDYYYPELLNRFFTLLRTNNPELAGE 191
Query: 365 PKPLKFL--REHYPALKQVYEKITD--EKTKKFCADVISVL--AMGVSGTLE 502
+ + H K ++ I+D ++ + VI L +G SG+++
Sbjct: 192 KRKYTIVPPSVHREGKKTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVD 243
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +2
Query: 170 YYLLIFCGPKKMSASSATSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTT 349
Y LL GP+++S E+ + +EL +L D E D + ++ L+ T
Sbjct: 238 YLLLPLAGPEELS-----EEDMDGMFDELQLLPDDKK-REPDHF-----IMKTLVETLVL 286
Query: 350 SMTSVPKPLKFLREH--YPALKQVYEKITDEKTKKFCADVISVL 475
+T+ + + +R YP +++++ + DE+ ++ C ++ +L
Sbjct: 287 -LTATREGREHMRRRKVYPIIRELHLNVDDEEIREVCDQLVQML 329
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 597 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 481
P+N + +SPT VP +Y +S+ A PL P
Sbjct: 450 PNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAP 488
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.7
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +2
Query: 389 EHYPAL-KQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 565
E+Y L +QVY+K T KTKK + S L + + TLE+ L L ++ D
Sbjct: 304 ENYRNLVRQVYDKDTYFKTKKDDLTLSSELLV-IPATLELISSMTSL-------LQSLAD 355
Query: 566 WGHEYVRQLEGEIAEEWNIENMDSLLPLVRD 658
G + + + E + E+ ++ MD + +V +
Sbjct: 356 -GTDELEEQEDSLMEDEDLSYMDDMSNVVNE 385
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 128 RVPLFNCSRKASVTYYLLIFCGPKKMSASSATSEEDKRLQEEL 256
+ PLFNC R+ S Y +F +K ++ T + +L EL
Sbjct: 13 KYPLFNCERRFS---YFDMFRSKRKFTSGILTEQLALKLDSEL 52
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 191 GPKKMSASSATSEEDKRLQEELNMLVDKLLGNEVD-----LYFPALQMLSNLIRTSTTSM 355
GP + S +S + LN++++ E D + + AL+ N + + TS
Sbjct: 89 GPSGLDGSQLSSSFQN--DQLLNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVTSK 146
Query: 356 TSVPKPLKFLREHYP 400
+ +PLK L +YP
Sbjct: 147 EILYEPLKDLEANYP 161
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 571 SPITYI*QCSQKTILQTLSLFCNFQSTAYAH 479
SP+TY+ S ++ILQTL T Y +
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGN 355
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 509 EKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEWNIENM 631
EK EC CLL + ++G++ Y R L IAE+ + ++
Sbjct: 95 EKSECFIKCLLLLILSLGNYS-PYSRNLLYSIAEKLGLSSI 134
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 194 PKKMSASSATSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVP 367
PKK S SS ++ K E L ++++LY L+ +N + +++ + +S P
Sbjct: 280 PKKKSFSSMLAQVKKEKAENNGSDGYDLQPTKSQLELYQSILRKRANQVSSTSLTKSSSP 339
Query: 368 KPL 376
KPL
Sbjct: 340 KPL 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,487
Number of Sequences: 5004
Number of extensions: 61105
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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