Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23o05
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   167   5e-42
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    31   0.82 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    31   0.82 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    31   0.82 
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   5.8  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  167 bits (407), Expect = 5e-42
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 5/170 (2%)
 Frame = +2

Query: 224 SEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 403
           SEED++L+E+LN+LV +L   +  LY P+L+ +  LIR STTSMTSVPKPLKF+R HY  
Sbjct: 34  SEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPHYNK 93

Query: 404 LKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYV 583
           +K+++  I     KK CAD+ISVLAM         E+ + + Y +LG+   +GDWGHEYV
Sbjct: 94  MKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGHEYV 147

Query: 584 RQLEGEIAEEWNIENMD-----SLLPLVRDVITFDMKHSAEIQACDLLME 718
           R L  E++EEW  E         LL L +D+++  MKH+AE++ACDLL+E
Sbjct: 148 RHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNAEVEACDLLIE 197


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 392 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 568
           H PA K  YE+   EK   +  D   ++   V    +E+A+ RE L+  +    S   D 
Sbjct: 62  HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121

Query: 569 GHEYVRQLEGEIAEEWNIENMDSL 640
             + V ++E +IA+  N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 230 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 403
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 677 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 736

Query: 404 LKQVYEKITDE 436
           +    EKI  E
Sbjct: 737 VHTDNEKILGE 747


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 230 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 403
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 750 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 809

Query: 404 LKQVYEKITDE 436
           +    EKI  E
Sbjct: 810 VHTDNEKILGE 820


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 230 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 403
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 750 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 809

Query: 404 LKQVYEKITDE 436
           +    EKI  E
Sbjct: 810 VHTDNEKILGE 820


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 131 VPLFNCSRKASVTYYLLIFCGPKKMSASSATSEEDKRLQE 250
           VPL   S   S  +Y++IF    K + +S+T EE K  +E
Sbjct: 180 VPLNALSSVVSAFFYVMIFWTVHKSTPNSSTGEEQKLRRE 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,387
Number of Sequences: 27780
Number of extensions: 342558
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)