Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23o04
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 247 8e-66
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 113 1e-25
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 73 3e-13
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 62 3e-10
Z68316-4|CAA92683.1| 234|Caenorhabditis elegans Hypothetical pr... 62 6e-10
AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical ... 31 0.71
U50300-2|AAC48102.1| 335|Caenorhabditis elegans Serpentine rece... 29 2.9
Z77665-8|CAB01224.2| 135|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 29 5.0
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 28 6.6
AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical ... 28 8.7
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 247 bits (604), Expect = 8e-66
Identities = 114/200 (57%), Positives = 156/200 (78%), Gaps = 4/200 (2%)
Frame = +1
Query: 142 WLVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPD 321
W++ L V+ A SY + VDA+ E+CF++ + + TK+GL FE+AEGGFLDIDV I GPD
Sbjct: 6 WILAVLF--VTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPD 63
Query: 322 GNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTK----SGN 489
I+K ERESSG +TF+A G YTYCF NKMS+MTPK VMF +EI EP + + N
Sbjct: 64 NKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAAN 123
Query: 490 ENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLL 669
++ AD+ KLE+M++EL++ L ++KH+QEYM+VR+R+HR+INE+TNSRVVMW+ FEA VL+
Sbjct: 124 QDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLV 183
Query: 670 VMTIGQVYYLKRFFEVQRVV 729
MT+GQ++YLKRFFEV+ +V
Sbjct: 184 GMTVGQIFYLKRFFEVRTMV 203
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 113 bits (272), Expect = 1e-25
Identities = 58/195 (29%), Positives = 104/195 (53%), Gaps = 2/195 (1%)
Frame = +1
Query: 145 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDG 324
+V ++L + + T + +A +CFYE+++ D F++ GG D+D+II P+G
Sbjct: 6 IVSSILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNG 65
Query: 325 NVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEAD 504
V++K ++ F A G Y CFSN+ S+ + K+V + + G+ +
Sbjct: 66 KVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGA 125
Query: 505 H--NKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVMT 678
H +LE+ + LRTI Q + ++R+ R E N RV++WS+ +++V++ +
Sbjct: 126 HAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVVFIG 185
Query: 679 IGQVYYLKRFFEVQR 723
IGQV+ LK FF +R
Sbjct: 186 IGQVFLLKSFFNDKR 200
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 72.5 bits (170), Expect = 3e-13
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Frame = +1
Query: 145 LVVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIA-----EGGFLD----- 294
L++ LL+L + A S + ++CF E + +T + ++++ G+ D
Sbjct: 3 LLIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYPNIG 62
Query: 295 IDVIILGPDGNVIHKAERESSGIYTFSAPTAGKYTYC-FSNKMSSMTPKVVMFNLEIGEP 471
+ V + P+ VI + G +TF++ T G++ C +SN + + +L+I
Sbjct: 63 MHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAG 122
Query: 472 QTKSGNENEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMW 642
A +KL ++ I++L + I +Q Y + R+ R +ESTNSRV W
Sbjct: 123 DHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYW 182
Query: 643 SIFEASVLLVMTIGQVYYLKRFFEVQRVV 729
SI + VL + Q+ +L+ FFE +++V
Sbjct: 183 SIAQVVVLAITGAWQMRHLRGFFEAKKLV 211
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 62.5 bits (145), Expect = 3e-10
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Frame = +1
Query: 148 VVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDVIILGPDGN 327
+V L+ + A+S V ++C E + + + +E ++G + + G+
Sbjct: 4 LVIFLSAIVLAHSLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQGIQYTGSIHVTDTRGH 63
Query: 328 VIHKAER--ESSGIYTFSAPTAGKYTYCFSNKMSSMTP---KVVMFNLEIGEPQTKSGNE 492
++K E + G + F+A + C N + P + V L+ G +
Sbjct: 64 TLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYDDI 123
Query: 493 NEADHNK-LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLL 669
+A+ K LE ++ L +I D +M+ R+ R+ NESTNSRV+ SIF LL
Sbjct: 124 AKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLCLL 183
Query: 670 VMTIGQVYYLKRFFEVQRVV 729
+ I QV +L+ +F+ ++++
Sbjct: 184 GLAIWQVLFLRNYFKSKKLI 203
>Z68316-4|CAA92683.1| 234|Caenorhabditis elegans Hypothetical
protein K08E4.6 protein.
Length = 234
Score = 61.7 bits (143), Expect = 6e-10
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 20/203 (9%)
Frame = +1
Query: 166 LVSNAYSYTVTVDAHAEECFYENVE-ADTK-LGLSFEIAEGGFLDIDVIILGPDGNVIHK 339
++ Y +TV V A +CF++ V+ A K L + +++ +GG L+I+ +IL N++ +
Sbjct: 18 ILCGEYDFTVEVPAGKFQCFFQPVDLAKHKTLEVDYQVIDGGDLNINFMILH-GANILKQ 76
Query: 340 AERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMF---------NLEIGE--PQTKSG 486
+ + G + G Y CF N S + KVV F NL+ + ++
Sbjct: 77 DQLKVDGSHRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAHGNLDEADLSAMARTD 136
Query: 487 NENEADHNKLEDMIKELATTLRTIKHDQ---EYMQVRDRIH----RSINESTNSRVVMWS 645
++ A N+L I E IK++ EY Q R H R++ + RV WS
Sbjct: 137 SDLSAKMNELGVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAVMSANFDRVTFWS 196
Query: 646 IFEASVLLVMTIGQVYYLKRFFE 714
+ V++ + QV+ ++ FE
Sbjct: 197 VVHTLVMVGVAGVQVFMIRSLFE 219
>AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical
protein Y66H1B.5 protein.
Length = 438
Score = 31.5 bits (68), Expect = 0.71
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 265 FEIAE-GGFLDIDVIILGPDGN--VIHKAERESSGIYTFSAPT--AGKYTYCFSNKMSSM 429
F++ + G I+ + GPDG + H E +GIY S PT AG+Y F +
Sbjct: 269 FDVRDCGNVKKIESRVFGPDGKERLNHVRSTEQNGIYDVSFPTDMAGEYCVVFYINGQEV 328
Query: 430 TPKVVMFNLEIGEPQ 474
+V + +IG +
Sbjct: 329 AARVPVMAEKIGRKE 343
>U50300-2|AAC48102.1| 335|Caenorhabditis elegans Serpentine
receptor, class x protein2 protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 100 ITY--NFCFILVFYV*ACVCFNFRP---GPRNIHYFIC 2
+TY FCFI +FY + + F P G R + +FIC
Sbjct: 228 VTYAMQFCFISMFYTFSWITFRVFPIAIGDRGLEWFIC 265
>Z77665-8|CAB01224.2| 135|Caenorhabditis elegans Hypothetical
protein K02E11.7 protein.
Length = 135
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 519 GHDQRTCYYIKNYQTRSRVYAGA*SY 596
G +++TC Y +N QT+++V AG +Y
Sbjct: 72 GKNKKTCGYWENIQTKAKVVAGKTTY 97
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 570 LIVFDXXXXXSKFFDHVLKFIMVSFIFITRF 478
LI+F KF +HVL FI++ FI I F
Sbjct: 348 LIIFALMFTFYKFENHVLGFILICFICIFTF 378
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
gene nameprotein 278 protein.
Length = 1130
Score = 28.3 bits (60), Expect = 6.6
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Frame = +1
Query: 196 TVDAHAEECFYEN-VEADTKLGLSFEIAEGGFLDIDVIILGPDGNVIHKAERESSGIYTF 372
T+ A + N VE++TKL E E I D V+ KAER + + T
Sbjct: 780 TISAKTAQLLESNTVESETKLASVTEEREKEIQSFQTQISEKDNEVLTKAERINE-LETC 838
Query: 373 SAPTAGKYTYCFSNKMSSMTPK------VVMFNLEIGEPQTKSGNENEADHNKLEDMIKE 534
+ T K+ MT + VV+F+ I E +E EA N++ + +K
Sbjct: 839 LKEREVELT-GMRTKLDDMTQQLNEETTVVLFDNSIQE----KIDEKEATINEMNERLKS 893
Query: 535 LATTLRTIKHDQEYMQVRDRIHRSINES 618
+ + H++ YMQ R+ +S
Sbjct: 894 RENEIAKL-HEEMYMQKTQNEKRNEEQS 920
>AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical
protein H37A05.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 394 YTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELAT 543
Y CF + M P ++ F++++GE N NE K+ +I++L T
Sbjct: 360 YELCFPASVILMLPFILSFSVKLGE------NINEESVEKMAGLIEDLVT 403
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,708
Number of Sequences: 27780
Number of extensions: 364907
Number of successful extensions: 911
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -