Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23n24
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 23 4.2
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 23 5.5
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 23 5.5
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 23 7.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 23 7.3
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 23 7.3
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 22 9.6
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 22 9.6
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 22 9.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 22 9.6
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 22 9.6
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 143 LFLACMPLALTCLILFLSFI 84
L+L +P+ALT +ILF ++
Sbjct: 470 LYLGLIPVALTIIILFSIYL 489
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 125 PLALTCLILFLSFIHHLTFFAGWDSR*FDYLV 30
P+ L C +F +I F GW YL+
Sbjct: 98 PMFLICGAVFAFYISQTPFPKGWAPEIIQYLI 129
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 161 LCNTFILFLACMPLALTCL 105
LC TF + C P+ALT L
Sbjct: 70 LCETFDSKVVCDPVALTVL 88
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 115 SARGIQARNSMNVLHRIIRS 174
+ +GIQ ++ N++HR I+S
Sbjct: 418 TCKGIQHLHARNIIHRDIKS 437
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 63 RVGLPLI*LPCIFI 22
R+GLP++ L C+FI
Sbjct: 477 RMGLPVLPLVCVFI 490
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -2
Query: 153 HIHTI--SRLYASRTDMPHTISFFYPSPYF 70
H+ +I +R Y +P S +PS YF
Sbjct: 126 HLDSIDRNRKYTEEIHIPQVYSVLFPSKYF 155
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 80 HLTFFAGWDSR*FDYLVFLSVGVII 6
H + GW+ DY+ FL G +I
Sbjct: 395 HDLYVKGWNQAWEDYIEFLQHGAMI 419
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 196 FPAHRLGRTLLFYVTHSYYFSLVCLSH*HASY 101
FP ++ T F V +L CL H +ASY
Sbjct: 114 FPLSKV--TSAFIVAWGILMTLTCLVHSYASY 143
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 92 SFIHHLTFFAGWDSR*FDYL 33
SF+HH ++AG+ + YL
Sbjct: 225 SFLHHSNYYAGFGLSYYLYL 244
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 196 FPAHRLGRTLLFYVTHSYYFSLVCL 122
FP L RT+L +V + +SLV +
Sbjct: 2648 FPERFLRRTVLIFVDYPESYSLVTI 2672
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 157 VTHSYYFSLVCL 122
+T SY+F+L+CL
Sbjct: 197 ITPSYFFTLLCL 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,335
Number of Sequences: 5004
Number of extensions: 15163
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -