Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n24
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611...    27   2.7  
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435...    26   4.8  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    26   4.8  
01_06_0095 - 26395104-26395871,26396040-26396486                       25   6.3  

>06_03_1201 +
           28359286-28359452,28360018-28360075,28361060-28361152,
           28362100-28362421,28362698-28362982,28363431-28363459
          Length = 317

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 193 PAHRLGRTLLFYVTHSYYFSLVCLSH*HASYYFFLLSITLLSL 65
           P  RLG+ +L    +++  S+  L H  AS   +L+ +  LSL
Sbjct: 122 PISRLGKLVLAACKNAFSSSVGALGHGQASNVAYLIGVDALSL 164


>03_06_0721 -
           35742380-35742736,35743206-35743398,35743497-35743552,
           35745951-35746727
          Length = 460

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 109 ASYYFFLLSITLLSLPGGTPA 47
           ASY     +  L SLPGGTPA
Sbjct: 31  ASYLGLSFAFFLASLPGGTPA 51


>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
            2785402-2785486,2785517-2787578,2787732-2787753,
            2788157-2788327,2791473-2791517,2792558-2793874,
            2793962-2794012,2794090-2794188,2794352-2794504,
            2794554-2794571
          Length = 1789

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 19   TDKNTR*SN*RESHPAKKVR*WIKERNSMRHVSARGI 129
            T +  R S+  E  P +      +ERN  RH+S  GI
Sbjct: 1645 TARRRRSSSLYEERPPQTFHDLFRERNGRRHISIEGI 1681


>01_06_0095 - 26395104-26395871,26396040-26396486
          Length = 404

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 211 FFFSPFPAHRLGRTLLFYVTHSYYFSLV 128
           F F P P +     +L  +T++ YF LV
Sbjct: 9   FLFGPVPVYFSALAILILLTNAQYFGLV 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,633,516
Number of Sequences: 37544
Number of extensions: 94233
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)