Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23n24
(211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 26 4.2
U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein. 26 4.2
AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated... 26 4.2
U97003-1|AAB52270.2| 527|Caenorhabditis elegans Udp-glucuronosy... 25 5.6
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 25 5.6
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 25 7.3
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 25 7.3
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 25 7.3
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 25 7.3
AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf (d... 25 7.3
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 25 7.3
Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 152 TFILFLACMPLALTCLILFLSFIHHLTFF 66
TF++ A PL LT L+ FLS + L FF
Sbjct: 280 TFVI--ATFPLLLTYLVDFLSLGYRLAFF 306
>U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein.
Length = 415
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 173 DLIILCNTFILFLACMPLALTCLILFLS 90
+L+I C +F+ + MPL+L + F+S
Sbjct: 65 ELLIFCVSFLFVVMTMPLSLLFALKFIS 92
>AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated
protein 24 protein.
Length = 415
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 173 DLIILCNTFILFLACMPLALTCLILFLS 90
+L+I C +F+ + MPL+L + F+S
Sbjct: 65 ELLIFCVSFLFVVMTMPLSLLFALKFIS 92
>U97003-1|AAB52270.2| 527|Caenorhabditis elegans
Udp-glucuronosyltransferase protein32 protein.
Length = 527
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 171 PYYSM*HIHTISRLYASRTDMPHTISFFYP 82
P Y+ H + ++RL + T+ H ++FF P
Sbjct: 27 PAYAASHTNFMARLADTLTEAGHNVTFFTP 56
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 176 QDLIILCNTFILFLACMPLALTCLIL 99
Q I+L + +LF+AC LA C I+
Sbjct: 298 QTSIMLISIVLLFIACNTLAFVCNIM 323
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 106 SYYFFLLSITLLSLPGGTPAN 44
S+YF +S+T + L TPAN
Sbjct: 331 SFYFCFISLTTIGLGDVTPAN 351
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 106 SYYFFLLSITLLSLPGGTPAN 44
S+YF +S+T + L TPAN
Sbjct: 331 SFYFCFISLTTIGLGDVTPAN 351
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 106 SYYFFLLSITLLSLPGGTPAN 44
S+YF +S+T + L TPAN
Sbjct: 331 SFYFCFISLTTIGLGDVTPAN 351
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 193 PAHRLGRTLLFYVTHSYYFSLVC-LSH*HASYYFFLLSITLLSLP 62
P H LG + Y T + ++ L + H S FF S+TLL +P
Sbjct: 31 PFHLLGLYCILYKTPAQMKAVKWYLLNLHVSVMFFDNSVTLLGIP 75
>AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 3 protein.
Length = 666
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 155 NTFILFLACMPLALTCLILFLSFIHHLTFF 66
+TF +P+ + C I ++ FI +LT++
Sbjct: 587 STFGYNAVSIPITIFCAIFYIIFIAYLTYY 616
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 211 FFFSPFPAHRLGRTLLFYVTHSYYFSLVCLSH 116
FFF P+ + TL + + Y FSL SH
Sbjct: 1068 FFFHSHPSSIILATLSIFRQYIYLFSLFSFSH 1099
>Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical
protein F46B3.11 protein.
Length = 326
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 170 LIILCNTFILFLACMPLALTCLILFLSFIHHLT 72
L + N F + + +L C I+FL+ +H T
Sbjct: 54 LFPITNCFYKIIKALTRSLICFIVFLTVFNHTT 86
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/39 (23%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -3
Query: 131 CMPLALTCLILFLSFIHHL-TFFAGWDSR*FDYLVFLSV 18
C+ L L C+ILF+ ++ + + +G+ ++ + + F+++
Sbjct: 261 CIQLVLPCIILFIPVVYFIYSMLSGYYNQALNNISFVTI 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,878,961
Number of Sequences: 27780
Number of extensions: 89015
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -