Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23n21
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 30 0.39
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.69
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.91
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 6.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 6.4
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 26 6.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.5
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.39
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Frame = +1
Query: 283 KLEDYLPEGEVSSNNIQHISEREPDDGDI-DPSQDPMAGTIFMERSKASIENGMTRKRSQ 459
K D PEG+ S+ S+ + DG I DP Q + S+ T ++Q
Sbjct: 74 KAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQ 133
Query: 460 HQIADNKLKKSSSCSTIYL---DDSTVSQPNLKNTVRCVA-LAIYYHIKNRMSERRLDIF 627
++ + ++S+S +T L + + + ++ + A + K+ SE R +
Sbjct: 134 SKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNSKSPPSENRKNRL 193
Query: 628 DEKLHPLSKEGVSDDYDKYNPEHKQIY 708
L P++ V D Y E ++
Sbjct: 194 QNVLSPIASNNVPDFNQNYPTESNPMF 220
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 29.1 bits (62), Expect = 0.69
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 376 SQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTIYLDDST-VSQPNLKN 552
++ P+ F SK+S +NG+ H I N ++ S S S+ +L T + N+K
Sbjct: 194 TRSPLRNHNFSNPSKSS-KNGV------HTI--NNMQSSPSPSSSFLLPLTQIDSQNVKR 244
Query: 553 TVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSK 654
+ ++ + ++ R+ R+D+ DE LHP S+
Sbjct: 245 SNNYLSTSPPI-LEQRLKRHRIDVSDEDLHPSSQ 277
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 619 DIFDEK-LHPLSKEGVSDDYDKYNPEHKQIYK 711
++F +K + L E DDY+K E+K++YK
Sbjct: 175 ELFTQKQMLQLQNENFKDDYEKIKEENKRLYK 206
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 219 DFTTYDDYKECSLSFYTHCVTTRYTEII 136
D D++ + L FY C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 721 FLQIYKSACALDCIYHSHHSHLLCSKDEVSHQKYLTCAQTFYSLCD-SK*QVLHTSQYF 548
F ++ +A L C+Y + S+++ + KY + + +CD ++ T YF
Sbjct: 647 FADMWSTAIVLHCLYFRTYPFRKASQNDQLYAKYCKAWREYNLICDVQNIRISKTLPYF 705
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 691 LDCIYHSHHSHLLCSKDE 638
+D IYHS H H+ K+E
Sbjct: 93 IDTIYHSLHPHIALEKEE 110
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 212 QHMTIIKNVRYHSTHIVSRLDIRK**ADTEIR 117
QH+ + K ++Y + LD++K DTEI+
Sbjct: 99 QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +1
Query: 28 MNAMNSKISTICESENSTNQE**GTMGLLCLI-SVSAYYFRISSRDTMC--VE**RTFFI 198
++ MN+ T+ SE + + +G + L+ + ++S +D + ++ R +
Sbjct: 946 LDIMNNNAETLSPSEKTNLKNLGSWLGSITLLRNKPITTLQVSFKDLLLEGIDSGRIDRV 1005
Query: 199 IVICCKIMGNQNSCCCYRSPSPIRKDIVKL 288
+ CK++ +S ++ P+P I+KL
Sbjct: 1006 LPFVCKVLEKASSSVIFKPPNPWLMGILKL 1035
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,287
Number of Sequences: 5004
Number of extensions: 61715
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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