Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23n21
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.1  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 83  IKNDKVLWAFYVLFLCRLIISVYL 154
           +KND +LW F+V     +++  Y+
Sbjct: 82  MKNDVILWDFFVKNARMILLEEYI 105


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 83  IKNDKVLWAFYVLFLCRLIISVYL 154
           +KND +LW F+V     +++  Y+
Sbjct: 56  MKNDVILWDFFVKNARMILLEEYI 79


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 258 WTPIAAATILITHDFTTYDDYKE 190
           W P     +L  ++ +TYDD  +
Sbjct: 273 WAPFHVQRLLYVYEDSTYDDINQ 295


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 609 LRHSILYVIVNSKCYTPHSIFQIW 538
           L+ +++ + V   C+TP+ +  +W
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLW 282


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 92  DKVLWAFYVLFLCRLIISVYLVVTQ 166
           D +L    +L LC + I  YL VTQ
Sbjct: 118 DILLCTASILSLCAISIDRYLAVTQ 142


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 389 WLAPFSWNVLKLQ*RMV*LGSG 454
           WL  +SW + K    M+ +G G
Sbjct: 322 WLEQYSWALFKAMSHMLCIGYG 343


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 389 WLAPFSWNVLKLQ*RMV*LGSG 454
           WL  +SW + K    M+ +G G
Sbjct: 290 WLEQYSWALFKAMSHMLCIGYG 311


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 553 YFSNLVETQYYHLSKL*NRNCFSLIYC 473
           YFS  +    Y+L  +  RN F    C
Sbjct: 318 YFSTTINPILYNLMSIKYRNAFKQTIC 344


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 9   IVKKIMNECNEF*NFYN 59
           I+  + N CN   N+YN
Sbjct: 303 IISSLSNSCNYSNNYYN 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,007
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)